Click here to switch to the map view.

The map label for this gene is osmF [H]

Identifier: 51595580

GI number: 51595580

Start: 1472476

End: 1473408

Strand: Direct

Name: osmF [H]

Synonym: YPTB1236

Alternate gene names: 51595580

Gene position: 1472476-1473408 (Clockwise)

Preceding gene: 51595578

Following gene: 51595581

Centisome position: 31.03

GC content: 48.34

Gene sequence:

>933_bases
ATGGCACTGTTCCTAACTCGTAGCCGGATTTTTGCAGTGGCTGCTATCATGCTGTCTGCATCGAGTGGTATATCGCACGC
GGCAGATAACGTCCGTGTAGGCTCTAAAATTGATACCGAAGGCTCCTTGCTGGGCAATATTATTGTGCAGGTTTTGGAGG
CTAACGGGATTAAAACCACCAATAAATCCCAACTGGGAGCAACCAAAGTCGTACGTGGGGCGATTACTGCCGGTGAGATT
GATATTTATCCTGAATATACGGGGAATGGGGCTTTCTTCTTTTCTGATGAACAAGATCCTGCCTGGAAGAGTGCCAAAGC
GGGCTATGAGAAAGTAAAAGCGCTGGATTACGAAAAAAATAAATTGGTATGGCTCTCTCCCGCGCCAGCGAACAATACCT
GGACCATTGCTGTACGAAAAGACTTAGCCACGGCCAATAATTTGCGAACGCTGGATGATTTAGGTAAGTGGATCAATGGC
GGAGGTCAGTTTAAATTAGCCGCCTCAGCCGAGTTTATCGAGCGGCCTGATGCGTTACCCGCTTTCCAACAGGCGTATGG
TTTTACGCTGAATCAAGATCAACTACTGTCCCTGGCTGGGGGAGATACCGCTGTGACGATTAAAGCGGCAGCAGAACAGA
TCTCAGGAGTGAATGCCGCCATGGCTTATGGTACCGATGGTCCTGTAGCGGCACTGGGTTTACAGACTCTGGAAGATACT
AAAGGCGTGCAGCCGATTTATGCGCCAGCTCCAATCATCCGTGAAGTTACTCTGAAAGCTCACCCGAACATCCCGGCTTT
GCTTAATCCGGTATTCGCCACACTGGATGGCCCAACGTTACAAAAGCTGAATGCACGTATTGCGGTGGAAGGGCAGGATG
CAAAGAAAGTGGCTGCCAATTATCTAAAAGATAACGGATTTATTAAAAACTAA

Upstream 100 bases:

>100_bases
TGGTTTGAATCGCATTTATGCTAGCCCGTAGAACCACCAACGTTCAGGCAACATGAAGAAACTTGAAGTATAACGGGGAT
AAACTGATAAGAGGTGACGT

Downstream 100 bases:

>100_bases
CCATTAGCTGGGGGAGCCAGCCGACCAGTGTGGCACTATAAGCTTATTCGTTTTATGGTGCTATTCGTTTCATGGCGCCA
TCCGTTTTATGGTGCCATCA

Product: ABC type periplasmic choline/glycine/betaine binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTTNKSQLGATKVVRGAITAGEI
DIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKNKLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLGKWING
GGQFKLAASAEFIERPDALPAFQQAYGFTLNQDQLLSLAGGDTAVTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDT
KGVQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYLKDNGFIKN

Sequences:

>Translated_310_residues
MALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTTNKSQLGATKVVRGAITAGEI
DIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKNKLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLGKWING
GGQFKLAASAEFIERPDALPAFQQAYGFTLNQDQLLSLAGGDTAVTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDT
KGVQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYLKDNGFIKN
>Mature_309_residues
ALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTTNKSQLGATKVVRGAITAGEID
IYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKNKLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLGKWINGG
GQFKLAASAEFIERPDALPAFQQAYGFTLNQDQLLSLAGGDTAVTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDTK
GVQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYLKDNGFIKN

Specific function: May be part of an ABC transporter complex involved in uptake of osmoprotectant molecules [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=301, Percent_Identity=70.7641196013289, Blast_Score=433, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 32902; Mature: 32771

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTT
CEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEECCCEECCCHHHHHHHHHHHHHCCCCCCC
NKSQLGATKVVRGAITAGEIDIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKN
CCCCCCHHHHHHHCEEECEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
KLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLGKWINGGGQFKLAASAEFIERPDALP
EEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHCCCCCCH
AFQQAYGFTLNQDQLLSLAGGDTAVTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDT
HHHHHHCCCCCHHHEEEEECCCEEEEEEEHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
KGVQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAAN
CCCCCEECCCCHHHEEEEECCCCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCHHHHHHH
YLKDNGFIKN
HHHCCCCCCC
>Mature Secondary Structure 
ALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTT
EEEEEHHHHHHHHHHHHHCCCCCCCCCCCEECCCEECCCHHHHHHHHHHHHHCCCCCCC
NKSQLGATKVVRGAITAGEIDIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKN
CCCCCCHHHHHHHCEEECEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC
KLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLGKWINGGGQFKLAASAEFIERPDALP
EEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHCCCCCCH
AFQQAYGFTLNQDQLLSLAGGDTAVTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDT
HHHHHHCCCCCHHHEEEEECCCEEEEEEEHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
KGVQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAAN
CCCCCEECCCCHHHEEEEECCCCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCHHHHHHH
YLKDNGFIKN
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]