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The map label for this gene is dmsD [H]

Identifier: 51595158

GI number: 51595158

Start: 970753

End: 971463

Strand: Direct

Name: dmsD [H]

Synonym: YPTB0808

Alternate gene names: 51595158

Gene position: 970753-971463 (Clockwise)

Preceding gene: 51595157

Following gene: 51595162

Centisome position: 20.46

GC content: 48.8

Gene sequence:

>711_bases
ATGATTAAAACAGATATGACTTATCAAGACATTGTTTATAAAGATACTGTTTATCAAGACAGTGTTTATCAAAAAATCGG
ACTAACGGGGCGAGTGCTAGGTGCGCTTTTTTATTGTGAGCCGGATAGCGCGGAGTGCCGCGATATTGTGGTGCAATTGC
GTAATGGCACGTGGGCCGCTGAATGGCCTTATGGTGGTGCCGACGAACTAATGCCGATTGCGACATTATTGGCGGCAGCT
CAATCAGATCAGTATCAATCCATTGCTCATCAATCAGCGGCAGCCCCATTAGCAGAAACATTGGAAGAGGCTTGGCAGCG
GCTGTTTATTGGTCCGTATGCCTTGCCAGCGCCGCCTTGGGGCTCCGTTTATCTGGATAAAGACATGGTGCTGTTTGGCG
ACTCCACACTAAAACTGCGTAACTGGATGCAGCAGCGGCATGTTGAAGTCACATTGAAACAGCAGGAGCCTGAAGATCAT
TTCGGTTTATTGATGATGATGGCGGCCTGGTTGGCAGAACATCAGCCGGTCGATCTCCCGGTTTTGTTAGCTGATCACTT
ATTACCCTGGAGTTATCGTTATCTGGCGTTGTTGCAATCCGATGCAGGCCACCCGTTTTATCAAGGGTTGGCACAGTTGG
CCACCCTGACCTTGACCCATTGGCAACATGAATTGCAGGTGACACCGGCTAGGGTTGAGTTATATCGCTAA

Upstream 100 bases:

>100_bases
AATAGCTTTGCTCTGCCTCATGGCGTGCTAAAACCAAGGTCATACAGGGCTGAACAACATGATCATACCAACATGATCAT
AACAATATGGTCGTAAGAAA

Downstream 100 bases:

>100_bases
ATCTGAACTTATTTATTTAAATCTGAACTTATTTATGTGATAACCCGCGTGACTTTTTACCGATATTACCGGTCAGGCTA
ATCAGTGAATCAAGGGGGAG

Product: twin-argninine leader-binding protein DmsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MIKTDMTYQDIVYKDTVYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGTWAAEWPYGGADELMPIATLLAAA
QSDQYQSIAHQSAAAPLAETLEEAWQRLFIGPYALPAPPWGSVYLDKDMVLFGDSTLKLRNWMQQRHVEVTLKQQEPEDH
FGLLMMMAAWLAEHQPVDLPVLLADHLLPWSYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR

Sequences:

>Translated_236_residues
MIKTDMTYQDIVYKDTVYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGTWAAEWPYGGADELMPIATLLAAA
QSDQYQSIAHQSAAAPLAETLEEAWQRLFIGPYALPAPPWGSVYLDKDMVLFGDSTLKLRNWMQQRHVEVTLKQQEPEDH
FGLLMMMAAWLAEHQPVDLPVLLADHLLPWSYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR
>Mature_236_residues
MIKTDMTYQDIVYKDTVYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGTWAAEWPYGGADELMPIATLLAAA
QSDQYQSIAHQSAAAPLAETLEEAWQRLFIGPYALPAPPWGSVYLDKDMVLFGDSTLKLRNWMQQRHVEVTLKQQEPEDH
FGLLMMMAAWLAEHQPVDLPVLLADHLLPWSYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR

Specific function: Binds to the twin-arginine signal peptide of dmsA and torA. Could be required for the biogenesis of DMSO reductase rather than for the targeting of dmsA to the inner membrane [H]

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein. Cytoplasm (By similarity). Note=Mainly cytoplasmic under aerobic conditions, and found in the inner membrane under anaerobic conditions (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family. DmsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081942, Length=213, Percent_Identity=46.4788732394366, Blast_Score=186, Evalue=9e-49,
Organism=Escherichia coli, GI1787272, Length=207, Percent_Identity=26.5700483091787, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 26865; Mature: 26865

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTDMTYQDIVYKDTVYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGTWAA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCCCHHHHHHHHHCCCCEEE
EWPYGGADELMPIATLLAAAQSDQYQSIAHQSAAAPLAETLEEAWQRLFIGPYALPAPPW
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
GSVYLDKDMVLFGDSTLKLRNWMQQRHVEVTLKQQEPEDHFGLLMMMAAWLAEHQPVDLP
CCEEECCCEEEECCCHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCH
VLLADHLLPWSYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR
HHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEECHHEEEECC
>Mature Secondary Structure
MIKTDMTYQDIVYKDTVYQDSVYQKIGLTGRVLGALFYCEPDSAECRDIVVQLRNGTWAA
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCCCHHHHHHHHHCCCCEEE
EWPYGGADELMPIATLLAAAQSDQYQSIAHQSAAAPLAETLEEAWQRLFIGPYALPAPPW
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
GSVYLDKDMVLFGDSTLKLRNWMQQRHVEVTLKQQEPEDHFGLLMMMAAWLAEHQPVDLP
CCEEECCCEEEECCCHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCH
VLLADHLLPWSYRYLALLQSDAGHPFYQGLAQLATLTLTHWQHELQVTPARVELYR
HHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEECHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]