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The map label for this gene is rhaB

Identifier: 51594739

GI number: 51594739

Start: 460747

End: 462204

Strand: Reverse

Name: rhaB

Synonym: YPTB0385

Alternate gene names: 51594739

Gene position: 462204-460747 (Counterclockwise)

Preceding gene: 51594742

Following gene: 51594738

Centisome position: 9.74

GC content: 53.02

Gene sequence:

>1458_bases
ATGGTTGCTATTGACCTTGGCGCGTCCAGCGGACGGGTGATGCTGGCAAGTTATTATCCCGGTCAGCAACAGCTTACGTT
GCGGGAAGTCTGCCGCTTTACCAACCAGATTAAATCTATTGATGGCTCCGATGTCTGGGATATCGATGCCATTGAACAAT
CTATCCGTGAGGGACTGAGCCAACTCGACAGTGAAGGGATAGCGCTGGACAGCATCGGTATTGATAGCTGGGGAGTTGAT
TTTGTTTTGCTTGATAAGCAAGGGAAACGGATCGGACAGCCCGTATCTTACCGTGATAGTCGTACTCAGGGAGTGATGGC
GCGGGCGCAGCAGACGCTGGGTAGCAATGCGATTTATCGCCGCACCGGTATTCAGTTCTTGCCGTTCAATACGCTGTATC
AACTGCGGGCATTAAGTGAACAACAACCTCACTTACTCGCCGATGTTGCCCACCTATTATTGATCCCAGACTATTTGCAT
TACCGCCTTACCGGCCAGCTAAACTGGGAATATACCAATGCCAGTACTACCCAGTTGCTCAACATCGAAACCGGCGATTG
GGATAGCGATTTACTGGCCTATGCCGGCGTACCGGCCCATTGGTTTGCCAAACCCGGCAAACCTGGCAATACCATCGGCT
ATTGGCACAGCGCCAACGGTCAGCAGGTTCCGGTGGTGGCCGTTGCCACCCATGACACGGCTAGCGCGGTTCTTGCCGCC
CCGCTTATTGATGCTGATGCTGCCTATCTTAGCTCCGGTACCTGGTCACTTATGGGCTTCGAAAGCGGTACACCACTCAC
CCACCAGCAGGCGCAGTGCAGCAATATCACCAACGAAGGGGGCGCTGAAGGCCGCTACCGCGTACTCAAAAATATTATGG
GTCTGTGGCTACTGCAACGGGCGACGGATGAATTGCAGATTGACGATTTACCGCAGCTTATTGAGCAAGCGGCACGACAA
CCCGCTTGCCGCTCGCTGATCAATCCCAATGACAGCCGTTTTATTAATCCACCCAATATGTGCCGTGAGATCCAAAACGC
CTGCCGTGAACATCAGTTCCCCGTGCCGAACACAGCCGCCCAGTTGGCCCGTTGTATCTTTGATAGCCTCGCCATGTTGT
ACCGGCAAGTGGCTCAAGAATTGGCAACACTCCGCGGACGCCCAATCAGCCATTTACATATCGTCGGTGGCGGCTGTCAA
AACCAATTTCTGAATCAACTGTGTGCCGATGCCTGTGGCTTAAATGTCAGCATGGGGCCGGTTGAGGCCTCCACGCTCGG
CAATATTGGTAGCCAATTAATCTCGCTGGGTGAGGTCGCTGATGTCACCCATTACCGCCGTATCGTGGCGAATAACTTCC
CATTGCACCATTTATCCCCTCACGACAACTCGGACTTTGCTGCCCATTGGCTGCAATTCCAGTCACTGAGTCAATTACCT
AAGGAACTTTGCATATGA

Upstream 100 bases:

>100_bases
ATTGAGAAACAACAGGCCGCTTATCATGCCCACACCATCTACATGTTCGCCATCTACATGCTCACCATCGGCAGTCACAT
CGCCAAAAGCTGCACGGCAC

Downstream 100 bases:

>100_bases
CGAACTCTATTGAACAGGCCTGGGATCTGGCTAAACAGCGTTTTGCCGCTGTCGGCGTTGATGTTGATGCCGCACTCACC
CGTCTTGATACGCTACCGGT

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MVAIDLGASSGRVMLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVD
FVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLH
YRLTGQLNWEYTNASTTQLLNIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAA
PLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQ
PACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQ
NQFLNQLCADACGLNVSMGPVEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLP
KELCI

Sequences:

>Translated_485_residues
MVAIDLGASSGRVMLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVD
FVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLH
YRLTGQLNWEYTNASTTQLLNIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAA
PLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQ
PACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQ
NQFLNQLCADACGLNVSMGPVEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLP
KELCI
>Mature_485_residues
MVAIDLGASSGRVMLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLSQLDSEGIALDSIGIDSWGVD
FVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYRRTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLH
YRLTGQLNWEYTNASTTQLLNIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAA
PLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQRATDELQIDDLPQLIEQAARQ
PACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAAQLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQ
NQFLNQLCADACGLNVSMGPVEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLP
KELCI

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family

Homologues:

Organism=Escherichia coli, GI1790338, Length=483, Percent_Identity=62.9399585921325, Blast_Score=625, Evalue=1e-180,
Organism=Escherichia coli, GI1789168, Length=383, Percent_Identity=26.6318537859008, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RHAB_YERPA (Q1C0V9)

Other databases:

- EMBL:   CP000308
- RefSeq:   YP_653858.2
- ProteinModelPortal:   Q1C0V9
- SMR:   Q1C0V9
- STRING:   Q1C0V9
- GeneID:   4119517
- GenomeReviews:   CP000308_GR
- KEGG:   ypa:YPA_3952
- eggNOG:   COG1070
- HOGENOM:   HBG313195
- ProtClustDB:   PRK10640
- BioCyc:   YPES360102:YPA_3952-MONOMER
- HAMAP:   MF_01535
- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449
- PANTHER:   PTHR10196
- TIGRFAMs:   TIGR02627

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N

EC number: =2.7.1.5

Molecular weight: Translated: 53425; Mature: 53425

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: BINDING 9-9 BINDING 254-254 BINDING 291-291 BINDING 299-299

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAIDLGASSGRVMLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLS
CEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYR
HHCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEH
RTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLL
HCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCEEEE
NIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAA
EEECCCCCCHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHH
PLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQR
HHHCCCHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
ATDELQIDDLPQLIEQAARQPACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAA
CCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
QLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACGLNVSMGP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCC
VEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KELCI
HHHCC
>Mature Secondary Structure
MVAIDLGASSGRVMLASYYPGQQQLTLREVCRFTNQIKSIDGSDVWDIDAIEQSIREGLS
CEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
QLDSEGIALDSIGIDSWGVDFVLLDKQGKRIGQPVSYRDSRTQGVMARAQQTLGSNAIYR
HHCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEH
RTGIQFLPFNTLYQLRALSEQQPHLLADVAHLLLIPDYLHYRLTGQLNWEYTNASTTQLL
HCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCEEEE
NIETGDWDSDLLAYAGVPAHWFAKPGKPGNTIGYWHSANGQQVPVVAVATHDTASAVLAA
EEECCCCCCHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHH
PLIDADAAYLSSGTWSLMGFESGTPLTHQQAQCSNITNEGGAEGRYRVLKNIMGLWLLQR
HHHCCCHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
ATDELQIDDLPQLIEQAARQPACRSLINPNDSRFINPPNMCREIQNACREHQFPVPNTAA
CCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH
QLARCIFDSLAMLYRQVAQELATLRGRPISHLHIVGGGCQNQFLNQLCADACGLNVSMGP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCC
VEASTLGNIGSQLISLGEVADVTHYRRIVANNFPLHHLSPHDNSDFAAHWLQFQSLSQLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
KELCI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA