Click here to switch to the map view.

The map label for this gene is rhaA

Identifier: 51594738

GI number: 51594738

Start: 459494

End: 460750

Strand: Reverse

Name: rhaA

Synonym: YPTB0384

Alternate gene names: 51594738

Gene position: 460750-459494 (Counterclockwise)

Preceding gene: 51594739

Following gene: 51594737

Centisome position: 9.71

GC content: 52.98

Gene sequence:

>1257_bases
ATGACGAACTCTATTGAACAGGCCTGGGATCTGGCTAAACAGCGTTTTGCCGCTGTCGGCGTTGATGTTGATGCCGCACT
CACCCGTCTTGATACGCTACCGGTCTCCATGCACTGCTGGCAAGGCGATGATGTCACCGGTTTTGAGGATCCCGATGGCG
TATTGACCGGCGGAATTCAGGCAACAGGAAACTACCCCGGCAAAGCGCGCAATGCGACCGAGTTGCGTTCTGACCTTGAA
TTGGCTTTGGCATTAATTCCTGGCCCTAAGCGACTCAATTTACATGCTATTTATCTGGAATCTGACACGCCGGTTGCGCG
CAATAAAATTGAGCCGCGCCACTTTAGTCACTGGGTTACATGGGCCAAAAAACACCAGTTGGGGCTGGATTTTAACCCCT
CTTGCTTCTCTCACCCGCTCAGCGCTGACGGCTTTACCTTGTCTCATGCTGATCCGGAAATCCGCCAGTTCTGGATTGAA
CACTGTCAGGCGAGTCGCCGGGTTTCTGCCTATTTTGGTGAACAGTTAGGAACGCCGTCGGTCATGAATATCTGGATCCC
CGATGGCATGAAAGACACGCCGATTGATCGCCTTGCCCCCCGTCAGCGCCTGCTATCGGCTCTGGATGAAGTCATCAGCG
AGAAGTTAAACCCGGCTCACCATATTGATGCGGTTGAGAGCAAATTGTTTGGTATTGGTGCTGAAAGTTACACCGTGGGC
TCTAACGAGTTTTATATGGGCTATGCCGCCAGTCGCCAAACGGCGCTGTGTCTGGATGCGGGTCACTTCCATCCAACCGA
GGTGATTTCCGACAAAATATCCAGCGCCATGCTGTATGTCCCACGCCTGCTATTGCATGTCAGCCGTCCGGTTCGCTGGG
ACAGTGACCATGTGGTGTTACTGGATGATGAAACCCAAGCCATCGCCAGCGAAATTATTCGTCACAACCTGTTTGATCGG
GTTCACATCGGCCTCGACTTCTTTGATGCCTCCATTAACCGGATTGCCGCTTGGGTTATTGGCACCCGCAACATGAAAAA
GGCCCTGTTACGCGCCTTACTGGAGCCGACCGACATGCTACGTCAACTGGAATTACGCGGGGATTACACTGCACGGCTGG
CGCTGCTGGAAGAACAAAAATCCCTGCCATGGCAAGCCATCTGGGAAGGTTACTGCCAGCGCAATGACGTACCGGTTGAT
GCCCGCTGGCTTGACGCAGTACGTGAATATGAACAACAGATTCTCAGCCAACGTTAA

Upstream 100 bases:

>100_bases
ACTTCCCATTGCACCATTTATCCCCTCACGACAACTCGGACTTTGCTGCCCATTGGCTGCAATTCCAGTCACTGAGTCAA
TTACCTAAGGAACTTTGCAT

Downstream 100 bases:

>100_bases
GGACTCGTAATTATGCAAGCTATTCTATCTTCCTGGTTTATTCAGGGAATGATTAAAGCCACCAGTGATATGTGGCACAA
AGGGTGGGATGAACGTAACG

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLE
LALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVTWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIE
HCQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDR
VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDMLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVD
ARWLDAVREYEQQILSQR

Sequences:

>Translated_418_residues
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLE
LALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVTWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIE
HCQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDR
VHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDMLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVD
ARWLDAVREYEQQILSQR
>Mature_417_residues
TNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQATGNYPGKARNATELRSDLEL
ALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVTWAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEH
CQASRRVSAYFGEQLGTPSVMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGS
NEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIIRHNLFDRV
HIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDMLRQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDA
RWLDAVREYEQQILSQR

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI48994990, Length=418, Percent_Identity=85.4066985645933, Blast_Score=758, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009308
- InterPro:   IPR013022 [H]

Pfam domain/function: PF06134 RhaA [H]

EC number: =5.3.1.14 [H]

Molecular weight: Translated: 47166; Mature: 47035

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCEE
ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVT
ECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCHHHCCCCCHHHHHHHH
WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRVSAYFGEQLGTPS
HHHHHCCCCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEC
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL
CCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDML
ECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHH
RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCEE
ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVT
ECCCCCCCCCCHHHHHHHHHEEEEECCCCCEEEEEEEEEECCCCHHHCCCCCHHHHHHHH
WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRVSAYFGEQLGTPS
HHHHHCCCCCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEC
SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL
CCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDML
ECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHH
RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR
HHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA