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The map label for this gene is nagD [H]

Identifier: 50843757

GI number: 50843757

Start: 2523628

End: 2524485

Strand: Reverse

Name: nagD [H]

Synonym: PPA2322

Alternate gene names: 50843757

Gene position: 2524485-2523628 (Counterclockwise)

Preceding gene: 50843758

Following gene: 50843756

Centisome position: 98.6

GC content: 60.26

Gene sequence:

>858_bases
ATGCATGACGTCATCGACATACCTACTGATTTCGCCCGGGCCTACGTGTTCGACATGGACGGCACTATCTACCTCGGTGA
GCACCTACTGCCGGGTGCTCGCCGCATGATCGAGGAATTGCGCCGTCGTGAGATCCCAGTGAGGTTTTTGTCGAACAACC
CGACCAAGGACCCGGACCAGTACGTCGACAAGCTCACGAGATTGGGTCTGCCCACGGCCATCGAGGACATCTCCAACACG
GTCGTGACGACAACGCGCTGGCTGGTCAACAACCACCCCGACGCTAAAGTTTTCGCGATCGCTGAGGAGCCCCTCAAGCG
GAGCCTACGTGAGGCCGGGATCGAGCTGTGTGAGGACCCCGAGAAGATAGACATCGTCATCGCTTCGTATGACCGCACCT
TCGACTACCGCAAGCTTCAGATCGCCTTCGACGCCATCTGGTTCCATAAGCGGGCATTCCTCATCCAGACCAACCCAGAT
CGGTTCTGCCCCTTCCCTGGCGGCCGTGGCGAGCCCGACTGCGCTGCCGTAACCGCAGCTATCGAGGCATGCACGGGACA
GCAGTGCAAGGTCAGCTTGGGCAAGCCGTCGCCGGTGATGCTTACCGAAGCCCTGTCCGGCCTCGACGTTGACCCGACAG
ACTGCGTTATGGTCGGTGACCGGCTGCAAACCGACATCCAGATGGCCCTCGATACCGGAATGAAGTCGGCCTGTGTGTTG
ACTGGCGAGGCCACTGCTGACGACGTTGCAGCTCTCGACGTTGAGCATCGTCCCACCTGGACTCTGGATCGCATCGACCG
ACTTATCCCAGCCTCGGCATGGCGCGAACTCGGCTGGACCGAAGACAACGATGACTGA

Upstream 100 bases:

>100_bases
AGCCATATCGATCCGCCCGCCGCTGCCATCTGGCTCGGTAACACCGTGGTCGTCTCGCTCGCCACCCTGTTCTCGTGATC
TCGCTTCAGGAGTAGCAACC

Downstream 100 bases:

>100_bases
CAAGACGACCGAGCTGCGTGCACCGCTGCCGCAGAGACACTTCGCAGGAGACAACGATGTTGAACAACGGCCCCTACCTC
TTAGGCATCGACTATGGCAC

Product: L-arabinose operon protein, hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MHDVIDIPTDFARAYVFDMDGTIYLGEHLLPGARRMIEELRRREIPVRFLSNNPTKDPDQYVDKLTRLGLPTAIEDISNT
VVTTTRWLVNNHPDAKVFAIAEEPLKRSLREAGIELCEDPEKIDIVIASYDRTFDYRKLQIAFDAIWFHKRAFLIQTNPD
RFCPFPGGRGEPDCAAVTAAIEACTGQQCKVSLGKPSPVMLTEALSGLDVDPTDCVMVGDRLQTDIQMALDTGMKSACVL
TGEATADDVAALDVEHRPTWTLDRIDRLIPASAWRELGWTEDNDD

Sequences:

>Translated_285_residues
MHDVIDIPTDFARAYVFDMDGTIYLGEHLLPGARRMIEELRRREIPVRFLSNNPTKDPDQYVDKLTRLGLPTAIEDISNT
VVTTTRWLVNNHPDAKVFAIAEEPLKRSLREAGIELCEDPEKIDIVIASYDRTFDYRKLQIAFDAIWFHKRAFLIQTNPD
RFCPFPGGRGEPDCAAVTAAIEACTGQQCKVSLGKPSPVMLTEALSGLDVDPTDCVMVGDRLQTDIQMALDTGMKSACVL
TGEATADDVAALDVEHRPTWTLDRIDRLIPASAWRELGWTEDNDD
>Mature_285_residues
MHDVIDIPTDFARAYVFDMDGTIYLGEHLLPGARRMIEELRRREIPVRFLSNNPTKDPDQYVDKLTRLGLPTAIEDISNT
VVTTTRWLVNNHPDAKVFAIAEEPLKRSLREAGIELCEDPEKIDIVIASYDRTFDYRKLQIAFDAIWFHKRAFLIQTNPD
RFCPFPGGRGEPDCAAVTAAIEACTGQQCKVSLGKPSPVMLTEALSGLDVDPTDCVMVGDRLQTDIQMALDTGMKSACVL
TGEATADDVAALDVEHRPTWTLDRIDRLIPASAWRELGWTEDNDD

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. NagD family [H]

Homologues:

Organism=Homo sapiens, GI10092677, Length=253, Percent_Identity=30.8300395256917, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI108796653, Length=289, Percent_Identity=26.9896193771626, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI269847098, Length=242, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1786890, Length=245, Percent_Identity=26.9387755102041, Blast_Score=95, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17558880, Length=301, Percent_Identity=27.2425249169435, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17562458, Length=301, Percent_Identity=27.5747508305648, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17560956, Length=299, Percent_Identity=27.4247491638796, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193210059, Length=261, Percent_Identity=31.0344827586207, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI86563050, Length=250, Percent_Identity=31.2, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24666141, Length=285, Percent_Identity=24.2105263157895, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19920940, Length=236, Percent_Identity=25, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24656326, Length=276, Percent_Identity=23.5507246376812, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI18859765, Length=271, Percent_Identity=23.9852398523985, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR006354
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 31936; Mature: 31936

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDVIDIPTDFARAYVFDMDGTIYLGEHLLPGARRMIEELRRREIPVRFLSNNPTKDPDQ
CCCCCCCCCHHHEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH
YVDKLTRLGLPTAIEDISNTVVTTTRWLVNNHPDAKVFAIAEEPLKRSLREAGIELCEDP
HHHHHHHCCCCHHHHHHCCHHEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCCC
EKIDIVIASYDRTFDYRKLQIAFDAIWFHKRAFLIQTNPDRFCPFPGGRGEPDCAAVTAA
CEEEEEEEECCCCCCCEEEEEEHHHHHEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
IEACTGQQCKVSLGKPSPVMLTEALSGLDVDPTDCVMVGDRLQTDIQMALDTGMKSACVL
HHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE
TGEATADDVAALDVEHRPTWTLDRIDRLIPASAWRELGWTEDNDD
ECCCCCCCCEEEECCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHDVIDIPTDFARAYVFDMDGTIYLGEHLLPGARRMIEELRRREIPVRFLSNNPTKDPDQ
CCCCCCCCCHHHEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHH
YVDKLTRLGLPTAIEDISNTVVTTTRWLVNNHPDAKVFAIAEEPLKRSLREAGIELCEDP
HHHHHHHCCCCHHHHHHCCHHEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCCC
EKIDIVIASYDRTFDYRKLQIAFDAIWFHKRAFLIQTNPDRFCPFPGGRGEPDCAAVTAA
CEEEEEEEECCCCCCCEEEEEEHHHHHEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
IEACTGQQCKVSLGKPSPVMLTEALSGLDVDPTDCVMVGDRLQTDIQMALDTGMKSACVL
HHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE
TGEATADDVAALDVEHRPTWTLDRIDRLIPASAWRELGWTEDNDD
ECCCCCCCCEEEECCCCCCCCHHHHHHHCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA