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The map label for this gene is ycjO [C]

Identifier: 50843121

GI number: 50843121

Start: 1812034

End: 1813056

Strand: Direct

Name: ycjO [C]

Synonym: PPA1657

Alternate gene names: 50843121

Gene position: 1812034-1813056 (Clockwise)

Preceding gene: 50843120

Following gene: 50843122

Centisome position: 70.78

GC content: 56.7

Gene sequence:

>1023_bases
ATGACCACTGCAACAGTGGAACAGACCAACAAAAGGTCTTCGCGGGCCAAATCTCAAGAACGTCTAGCCCTAGCACTCAT
CGCACCTACCCTTATCGTCATCCCCGTCATTCAGTCGATGAAGCAAACCCTCTACGGCCAGCCCGGGCTGGATCCAGAAA
CCGGATTCGTCAACGAGACCGAGCCGTTCGTCGGGATGAAGAACTTCGCCAACATTTTCACCGGCTCCGGGGAGAGATTC
TGGACCGCCTTCTGGAACACCACCTTGTTCGGTGTCGTTACAGTCGTGCTCGAGACCATCCTCGGCGTCATCATGGCGCT
CATCATGCACCGGGCGATGGCCGGACGTGGCATCGTCCGAGCCGCCATTCTGGTTCCTTGGGCTATTCCCACCGCCGTCT
CAGCCATTTTGTGGGGCTGGATCTTTAACCAGAATGGTGTGGCGAATGCCATCATCGGCACGCATATCATGTGGGCCTCG
GGCAACTGGACGGCCAAGTGGTCGATCATCATTGCCGACGTTTGGAAGACGGCTCCGTACATCGGTCTATTGACACTTGC
CGGTCTGCAAGTGATTCCGACTGAGGTTTACGAAGCGGCCAAGGTGGATGGTGCCAATGCGTGGAAGAGATTCGTCTCCA
TCACTTTGCCCTTGGTTAAACCGGCACTGGTCGTCGCCGTGTTGTTCCGGACCCTTGATGCTCTGCGTATGTTCGACCTG
CCGTTTATTCTCGTGGGGCCGCGTATGAAGTCAGTTGAGACACTGTCCATGCTGGTCCAGGATGAGGCTTCTAACCTGCG
GTACGGCGCTGCTGCTGCGTACGCGATCATCCTGTTCCTCTACGTGTTCATCATCGCATTCGCGTTCATCAAGATCCTCG
GAGCTGACCTCGTCGGCGACGAACACAAACACAAGAAGATGAAAGCCACCACCTTCGTCTCTGGTGGACGTCCGGGTGGA
CGTCGTGCCCCGCAGAAAGCCAATGCTGTACAAGCCGCAGCTAGCAAGGAGGCGGCGTCATGA

Upstream 100 bases:

>100_bases
GACCACATGGACACGGCGGGGCGGGTCACCTACCCCGCCGTACCTATGGATCTTGCTCGCACCACCCGGCCAACAGCGCC
AGGGGACAAGGAGCTTTACC

Downstream 100 bases:

>100_bases
GCACCGTAACTGCAACTGCGCCGGGGACCTTCGACCAGGAGACCCACCATAAGAAAAACACCTGGGCCAAGGTGCTGCCG
ATCATCGGCATCGTCCTCAT

Product: binding-protein-dependent transport system inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MTTATVEQTNKRSSRAKSQERLALALIAPTLIVIPVIQSMKQTLYGQPGLDPETGFVNETEPFVGMKNFANIFTGSGERF
WTAFWNTTLFGVVTVVLETILGVIMALIMHRAMAGRGIVRAAILVPWAIPTAVSAILWGWIFNQNGVANAIIGTHIMWAS
GNWTAKWSIIIADVWKTAPYIGLLTLAGLQVIPTEVYEAAKVDGANAWKRFVSITLPLVKPALVVAVLFRTLDALRMFDL
PFILVGPRMKSVETLSMLVQDEASNLRYGAAAAYAIILFLYVFIIAFAFIKILGADLVGDEHKHKKMKATTFVSGGRPGG
RRAPQKANAVQAAASKEAAS

Sequences:

>Translated_340_residues
MTTATVEQTNKRSSRAKSQERLALALIAPTLIVIPVIQSMKQTLYGQPGLDPETGFVNETEPFVGMKNFANIFTGSGERF
WTAFWNTTLFGVVTVVLETILGVIMALIMHRAMAGRGIVRAAILVPWAIPTAVSAILWGWIFNQNGVANAIIGTHIMWAS
GNWTAKWSIIIADVWKTAPYIGLLTLAGLQVIPTEVYEAAKVDGANAWKRFVSITLPLVKPALVVAVLFRTLDALRMFDL
PFILVGPRMKSVETLSMLVQDEASNLRYGAAAAYAIILFLYVFIIAFAFIKILGADLVGDEHKHKKMKATTFVSGGRPGG
RRAPQKANAVQAAASKEAAS
>Mature_339_residues
TTATVEQTNKRSSRAKSQERLALALIAPTLIVIPVIQSMKQTLYGQPGLDPETGFVNETEPFVGMKNFANIFTGSGERFW
TAFWNTTLFGVVTVVLETILGVIMALIMHRAMAGRGIVRAAILVPWAIPTAVSAILWGWIFNQNGVANAIIGTHIMWASG
NWTAKWSIIIADVWKTAPYIGLLTLAGLQVIPTEVYEAAKVDGANAWKRFVSITLPLVKPALVVAVLFRTLDALRMFDLP
FILVGPRMKSVETLSMLVQDEASNLRYGAAAAYAIILFLYVFIIAFAFIKILGADLVGDEHKHKKMKATTFVSGGRPGGR
RAPQKANAVQAAASKEAAS

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=259, Percent_Identity=27.7992277992278, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790465, Length=166, Percent_Identity=33.7349397590361, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789861, Length=289, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788764, Length=202, Percent_Identity=26.2376237623762, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36946; Mature: 36815

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTATVEQTNKRSSRAKSQERLALALIAPTLIVIPVIQSMKQTLYGQPGLDPETGFVNET
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EPFVGMKNFANIFTGSGERFWTAFWNTTLFGVVTVVLETILGVIMALIMHRAMAGRGIVR
CCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AAILVPWAIPTAVSAILWGWIFNQNGVANAIIGTHIMWASGNWTAKWSIIIADVWKTAPY
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEECCCCEEEEEEEEEEHHHHCCH
IGLLTLAGLQVIPTEVYEAAKVDGANAWKRFVSITLPLVKPALVVAVLFRTLDALRMFDL
HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFILVGPRMKSVETLSMLVQDEASNLRYGAAAAYAIILFLYVFIIAFAFIKILGADLVGD
CEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EHKHKKMKATTFVSGGRPGGRRAPQKANAVQAAASKEAAS
CHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTATVEQTNKRSSRAKSQERLALALIAPTLIVIPVIQSMKQTLYGQPGLDPETGFVNET
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EPFVGMKNFANIFTGSGERFWTAFWNTTLFGVVTVVLETILGVIMALIMHRAMAGRGIVR
CCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
AAILVPWAIPTAVSAILWGWIFNQNGVANAIIGTHIMWASGNWTAKWSIIIADVWKTAPY
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEECCCCEEEEEEEEEEHHHHCCH
IGLLTLAGLQVIPTEVYEAAKVDGANAWKRFVSITLPLVKPALVVAVLFRTLDALRMFDL
HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFILVGPRMKSVETLSMLVQDEASNLRYGAAAAYAIILFLYVFIIAFAFIKILGADLVGD
CEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EHKHKKMKATTFVSGGRPGGRRAPQKANAVQAAASKEAAS
CHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]