BacMap

Definition	Propionibacterium acnes KPA171202, complete genome.
Accession	NC_006085
Length	2,560,265

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The map label for this gene is yvfR [H]

Identifier: 50843032

GI number: 50843032

Start: 1677186

End: 1677935

Strand: Direct

Name: yvfR [H]

Synonym: PPA1557

Alternate gene names: 50843032

Gene position: 1677186-1677935 (Clockwise)

Preceding gene: 50843031

Following gene: 50843033

Centisome position: 65.51

GC content: 60.8

Gene sequence:

>750_bases
GTGCCGGAAACCCCTTTGACTCTGGACCCTCACGCTCCAACAGAAGTCCTGCTTCTCGAGGACGTGAGGGTCACCTTCGG
TCATGTTATTGCCCTTGATGCTCTGAGTTTGACCGCTGTCACCGGCGCTATCACCGCTGTGCTAGGCCCCAATGGTGCGG
GTAAGACGACGATGATGCGCTGCTGCACATCTCTCATCTCGCCCGACTCTGGGCGCATCGACGTACTTGGCCATGCCCCA
GGCAGCCCCGAGGCCGCCGCTGCCACCGGACTCATGCCTCAGAGCTCCGGTGCCTGGAGCGGCATCCGAGCTGGCGAGCT
ATTGCACTACATGGCGGGTCTGCACGCCAATCCCATCGACCCGGACCTCCTCATCGAAGCGCTAGCGATTACCCCTTTTG
CGCACACCACCTATCGACGCCTCTCCGGCGGCCAACAGCAGGCCGTCAACCTTGCCGCCGCCCTGGTTGGCCGCCCCAAG
CTGGTATTCCTCGATGAACCGACCTCGGGGATGGATCCTCACGCCCGTCATCATACGTGGGATATCGTTGAGCAAATGCG
TCATGACGGTGTCTCCGTCGTGCTCACTACCCACAACATGGATGAGGCTCAACGGCTGGCTGATCACGTCTGGATCGTCG
ATCGCGGCAGGGTCGCAACTCATGGAACTGTGCCAGAGCTCACCGCTGAGTCGAGTTTGGAAGATGTGTTCCTCACTCAC
ACTAGTGACCGCGCAGCAGGGAGGAATTGA

Upstream 100 bases:

>100_bases
ATGCGAATTGACTCGACGAAGGATCCTGAAGAGTTCGGCGTCGTCGCTAAGGAGGCTGGCAGCGGGTCGTGATTGGCAGA
AGGGTTCTACACTGGCCGTC

Downstream 100 bases:

>100_bases
CATGACGACACTCGATCTCCACCCCGCACCTCAGGCCGCACCGGCTGCTGCACGCGTGCGTAACCACGCTCTCACCGAGG
TGCGTCTGGTGATGCGCAAC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MPETPLTLDPHAPTEVLLLEDVRVTFGHVIALDALSLTAVTGAITAVLGPNGAGKTTMMRCCTSLISPDSGRIDVLGHAP
GSPEAAAATGLMPQSSGAWSGIRAGELLHYMAGLHANPIDPDLLIEALAITPFAHTTYRRLSGGQQQAVNLAAALVGRPK
LVFLDEPTSGMDPHARHHTWDIVEQMRHDGVSVVLTTHNMDEAQRLADHVWIVDRGRVATHGTVPELTAESSLEDVFLTH
TSDRAAGRN

Sequences:

>Translated_249_residues
MPETPLTLDPHAPTEVLLLEDVRVTFGHVIALDALSLTAVTGAITAVLGPNGAGKTTMMRCCTSLISPDSGRIDVLGHAP
GSPEAAAATGLMPQSSGAWSGIRAGELLHYMAGLHANPIDPDLLIEALAITPFAHTTYRRLSGGQQQAVNLAAALVGRPK
LVFLDEPTSGMDPHARHHTWDIVEQMRHDGVSVVLTTHNMDEAQRLADHVWIVDRGRVATHGTVPELTAESSLEDVFLTH
TSDRAAGRN
>Mature_248_residues
PETPLTLDPHAPTEVLLLEDVRVTFGHVIALDALSLTAVTGAITAVLGPNGAGKTTMMRCCTSLISPDSGRIDVLGHAPG
SPEAAAATGLMPQSSGAWSGIRAGELLHYMAGLHANPIDPDLLIEALAITPFAHTTYRRLSGGQQQAVNLAAALVGRPKL
VFLDEPTSGMDPHARHHTWDIVEQMRHDGVSVVLTTHNMDEAQRLADHVWIVDRGRVATHGTVPELTAESSLEDVFLTHT
SDRAAGRN

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI105990541, Length=200, Percent_Identity=34.5, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI45446740, Length=201, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI47078218, Length=201, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=8e-26,
Organism=Homo sapiens, GI21536376, Length=205, Percent_Identity=34.1463414634146, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI31657092, Length=205, Percent_Identity=35.1219512195122, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI150417984, Length=200, Percent_Identity=36.5, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI27881501, Length=213, Percent_Identity=30.5164319248826, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI30795238, Length=213, Percent_Identity=30.5164319248826, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI116734710, Length=200, Percent_Identity=33, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI27262624, Length=205, Percent_Identity=33.6585365853659, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI27262626, Length=205, Percent_Identity=33.6585365853659, Blast_Score=107, Evalue=9e-24,
Organism=Homo sapiens, GI27477115, Length=204, Percent_Identity=29.9019607843137, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI27436953, Length=233, Percent_Identity=28.3261802575107, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI153792144, Length=206, Percent_Identity=29.126213592233, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI6005701, Length=207, Percent_Identity=28.9855072463768, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI9665248, Length=253, Percent_Identity=28.8537549407115, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4505771, Length=242, Percent_Identity=24.7933884297521, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9961252, Length=242, Percent_Identity=24.7933884297521, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI11967969, Length=212, Percent_Identity=27.8301886792453, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87081782, Length=223, Percent_Identity=33.6322869955157, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=30, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=28.9915966386555, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=32.3404255319149, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI48994943, Length=241, Percent_Identity=29.4605809128631, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789593, Length=222, Percent_Identity=30.6306306306306, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=28.5106382978723, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788165, Length=236, Percent_Identity=30.9322033898305, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788225, Length=219, Percent_Identity=30.1369863013699, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87081791, Length=225, Percent_Identity=28.4444444444444, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=30.952380952381, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082268, Length=238, Percent_Identity=28.9915966386555, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081709, Length=220, Percent_Identity=28.6363636363636, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1789672, Length=226, Percent_Identity=28.3185840707965, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1789586, Length=225, Percent_Identity=29.3333333333333, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787089, Length=219, Percent_Identity=26.4840182648402, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790544, Length=241, Percent_Identity=27.8008298755187, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=30.1435406698565, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790467, Length=216, Percent_Identity=28.2407407407407, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786803, Length=234, Percent_Identity=26.0683760683761, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790190, Length=231, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788210, Length=229, Percent_Identity=27.5109170305677, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788897, Length=212, Percent_Identity=29.2452830188679, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787164, Length=212, Percent_Identity=31.1320754716981, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790162, Length=269, Percent_Identity=26.0223048327138, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1786872, Length=243, Percent_Identity=27.1604938271605, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1789032, Length=210, Percent_Identity=29.0476190476191, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=28.8557213930348, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787792, Length=212, Percent_Identity=28.3018867924528, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786563, Length=201, Percent_Identity=26.865671641791, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789991, Length=228, Percent_Identity=22.8070175438596, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788644, Length=230, Percent_Identity=27.8260869565217, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787105, Length=202, Percent_Identity=28.2178217821782, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786345, Length=221, Percent_Identity=26.6968325791855, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI48994997, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787112, Length=228, Percent_Identity=27.6315789473684, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081834, Length=220, Percent_Identity=27.7272727272727, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788540, Length=226, Percent_Identity=26.5486725663717, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693107, Length=248, Percent_Identity=23.7903225806452, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786981, Length=199, Percent_Identity=29.1457286432161, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=204, Percent_Identity=33.8235294117647, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17510237, Length=219, Percent_Identity=31.0502283105023, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71983523, Length=224, Percent_Identity=33.9285714285714, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71983516, Length=224, Percent_Identity=33.9285714285714, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71983510, Length=224, Percent_Identity=33.9285714285714, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17565586, Length=202, Percent_Identity=36.6336633663366, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI193202878, Length=186, Percent_Identity=29.5698924731183, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17552010, Length=203, Percent_Identity=26.6009852216749, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=221, Percent_Identity=25.3393665158371, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582014, Length=220, Percent_Identity=31.8181818181818, Blast_Score=113, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24582012, Length=220, Percent_Identity=31.8181818181818, Blast_Score=113, Evalue=9e-26,
Organism=Drosophila melanogaster, GI24643674, Length=217, Percent_Identity=30.8755760368664, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24666092, Length=213, Percent_Identity=30.0469483568075, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI28574150, Length=210, Percent_Identity=33.8095238095238, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI116007328, Length=210, Percent_Identity=33.8095238095238, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI221512771, Length=213, Percent_Identity=30.9859154929577, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI85725262, Length=231, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24650855, Length=220, Percent_Identity=31.8181818181818, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24648314, Length=207, Percent_Identity=27.0531400966184, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24650853, Length=220, Percent_Identity=31.8181818181818, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281362751, Length=220, Percent_Identity=31.3636363636364, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28573573, Length=215, Percent_Identity=28.3720930232558, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI28573571, Length=215, Percent_Identity=28.3720930232558, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI221500365, Length=210, Percent_Identity=29.5238095238095, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007184, Length=210, Percent_Identity=29.5238095238095, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28574744, Length=197, Percent_Identity=24.3654822335025, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI45552805, Length=172, Percent_Identity=26.7441860465116, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161078426, Length=218, Percent_Identity=27.9816513761468, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24648279, Length=218, Percent_Identity=27.9816513761468, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17136592, Length=210, Percent_Identity=27.1428571428571, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647219, Length=173, Percent_Identity=26.5895953757225, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574533, Length=196, Percent_Identity=23.9795918367347, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85724864, Length=199, Percent_Identity=24.1206030150754, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24580555, Length=199, Percent_Identity=24.1206030150754, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85816269, Length=199, Percent_Identity=24.1206030150754, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24580553, Length=199, Percent_Identity=24.1206030150754, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161076682, Length=198, Percent_Identity=25.2525252525253, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19920532, Length=209, Percent_Identity=25.8373205741627, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580930, Length=209, Percent_Identity=25.8373205741627, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161076684, Length=198, Percent_Identity=25.2525252525253, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24581617, Length=198, Percent_Identity=25.2525252525253, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24581615, Length=198, Percent_Identity=25.2525252525253, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26453; Mature: 26322

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPETPLTLDPHAPTEVLLLEDVRVTFGHVIALDALSLTAVTGAITAVLGPNGAGKTTMMR
CCCCCCEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHH
CCTSLISPDSGRIDVLGHAPGSPEAAAATGLMPQSSGAWSGIRAGELLHYMAGLHANPID
HHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
PDLLIEALAITPFAHTTYRRLSGGQQQAVNLAAALVGRPKLVFLDEPTSGMDPHARHHTW
HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHH
DIVEQMRHDGVSVVLTTHNMDEAQRLADHVWIVDRGRVATHGTVPELTAESSLEDVFLTH
HHHHHHHHCCEEEEEEECCHHHHHHHHHHEEEEECCEEEECCCCCCHHHHCCCCEEEEEE
TSDRAAGRN
CCCCCCCCC
>Mature Secondary Structure 
PETPLTLDPHAPTEVLLLEDVRVTFGHVIALDALSLTAVTGAITAVLGPNGAGKTTMMR
CCCCCEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHH
CCTSLISPDSGRIDVLGHAPGSPEAAAATGLMPQSSGAWSGIRAGELLHYMAGLHANPID
HHHHHHCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
PDLLIEALAITPFAHTTYRRLSGGQQQAVNLAAALVGRPKLVFLDEPTSGMDPHARHHTW
HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHH
DIVEQMRHDGVSVVLTTHNMDEAQRLADHVWIVDRGRVATHGTVPELTAESSLEDVFLTH
HHHHHHHHCCEEEEEEECCHHHHHHHHHHEEEEECCEEEECCCCCCHHHHCCCCEEEEEE
TSDRAAGRN
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]