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The map label for this gene is araQ [H]

Identifier: 50842935

GI number: 50842935

Start: 1572025

End: 1572921

Strand: Direct

Name: araQ [H]

Synonym: PPA1456

Alternate gene names: 50842935

Gene position: 1572025-1572921 (Clockwise)

Preceding gene: 50842934

Following gene: 50842938

Centisome position: 61.4

GC content: 59.53

Gene sequence:

>897_bases
ATGAGCACTGCACAGGCAACCCGTCCAGCCAAGCAGAAGCCGTGGCGCGGCCGACACGCCTTCGACCCAACTCGTCCCAC
CCTCGCCGGGCTCATCGGGCGTTACCTCCTCCTGATCTTCGTCGTCATCATCTCGATCGGACCATTCCTGTGGCAGCTCT
CGACCTCCCTCAAGAGTGTCAATGAGAACATCTACTCCTTTCCGCCCCACCTCATCCCCCAGGAATTCACTATTGACGCG
TACCGACGCGTTGCCCATGTGGTACCAATTCTCCAGTATGCCTGGCATTCAGTGTTTGTCGCCGCGGTCTGCGTCGTCGG
TAATGTCGTGCTGGCGTCGTTGGCCGGTTACGCATTGACCTGCATGAAGTTCCGCGGCAAGAAGGTCGTGATGGGCATCC
TGCTGTCGGTTCTCCTGCTGCCGGGTGAAGTGACACTGACCAGCCAGTACCTCGTCATCAAGGGTATGGGCCTTGCGAAC
ACGCTAGCCGGCGTGGCCATTCCGGGTGTCGTCGGTGCCATCAACGTTCTGCTCATGGCGACCGCCTGTCGAGCCGTCCC
TCCATCGGTTTTAGATGCGGCAACCGTTGACGGCGCGAACACGTGGTCGAAGATTCGCCACATCGTATGGCCCAACATCA
GGGGCATGGCCTCCGTGGTCGCGGTGTTCGCGTTCATCGGGGCCTGGGACGACTTTCTGTGGCCACTGGTTGTTCTCAAT
GATCCAGACAAGTACACGCTGACAGTCGGCATGCAGTACCTCAGTTCGACGATGTCCACCGATCCACGCGAGGTCGCGGC
CGGTACGGTGATCGCCCTTATCCCGATCATTATCATCTTCGCGTCGATGCAGAAGGTGTTCTTCCGCGGTGTTGAGAGTG
GCGGGGTCAAGGGTTGA

Upstream 100 bases:

>100_bases
CCAACAACAAGGACCTCCGATCAGGACGTCGGACCAGACGAGGAGAAGGTCGCGCTCGCCGCGCCGCCGCTATCCAGAGC
GCCACCAAGGAGACGATGGC

Downstream 100 bases:

>100_bases
CACCACCGCCGCGTCGCCCGTTACTGGGCCTGGCCAGTGGATCCTCTCACGATGAGTTCAGGGGGTTGCTCGGTAACATC
CTCGACGTCGTCACCGCCAA

Product: transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSTAQATRPAKQKPWRGRHAFDPTRPTLAGLIGRYLLLIFVVIISIGPFLWQLSTSLKSVNENIYSFPPHLIPQEFTIDA
YRRVAHVVPILQYAWHSVFVAAVCVVGNVVLASLAGYALTCMKFRGKKVVMGILLSVLLLPGEVTLTSQYLVIKGMGLAN
TLAGVAIPGVVGAINVLLMATACRAVPPSVLDAATVDGANTWSKIRHIVWPNIRGMASVVAVFAFIGAWDDFLWPLVVLN
DPDKYTLTVGMQYLSSTMSTDPREVAAGTVIALIPIIIIFASMQKVFFRGVESGGVKG

Sequences:

>Translated_298_residues
MSTAQATRPAKQKPWRGRHAFDPTRPTLAGLIGRYLLLIFVVIISIGPFLWQLSTSLKSVNENIYSFPPHLIPQEFTIDA
YRRVAHVVPILQYAWHSVFVAAVCVVGNVVLASLAGYALTCMKFRGKKVVMGILLSVLLLPGEVTLTSQYLVIKGMGLAN
TLAGVAIPGVVGAINVLLMATACRAVPPSVLDAATVDGANTWSKIRHIVWPNIRGMASVVAVFAFIGAWDDFLWPLVVLN
DPDKYTLTVGMQYLSSTMSTDPREVAAGTVIALIPIIIIFASMQKVFFRGVESGGVKG
>Mature_297_residues
STAQATRPAKQKPWRGRHAFDPTRPTLAGLIGRYLLLIFVVIISIGPFLWQLSTSLKSVNENIYSFPPHLIPQEFTIDAY
RRVAHVVPILQYAWHSVFVAAVCVVGNVVLASLAGYALTCMKFRGKKVVMGILLSVLLLPGEVTLTSQYLVIKGMGLANT
LAGVAIPGVVGAINVLLMATACRAVPPSVLDAATVDGANTWSKIRHIVWPNIRGMASVVAVFAFIGAWDDFLWPLVVLND
PDKYTLTVGMQYLSSTMSTDPREVAAGTVIALIPIIIIFASMQKVFFRGVESGGVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=272, Percent_Identity=29.0441176470588, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=29.9539170506912, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789860, Length=239, Percent_Identity=23.8493723849372, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32206; Mature: 32074

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAQATRPAKQKPWRGRHAFDPTRPTLAGLIGRYLLLIFVVIISIGPFLWQLSTSLKSV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NENIYSFPPHLIPQEFTIDAYRRVAHVVPILQYAWHSVFVAAVCVVGNVVLASLAGYALT
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CMKFRGKKVVMGILLSVLLLPGEVTLTSQYLVIKGMGLANTLAGVAIPGVVGAINVLLMA
HHHHCCHHHHHHHHHHHHHCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH
TACRAVPPSVLDAATVDGANTWSKIRHIVWPNIRGMASVVAVFAFIGAWDDFLWPLVVLN
HHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEC
DPDKYTLTVGMQYLSSTMSTDPREVAAGTVIALIPIIIIFASMQKVFFRGVESGGVKG
CCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
STAQATRPAKQKPWRGRHAFDPTRPTLAGLIGRYLLLIFVVIISIGPFLWQLSTSLKSV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NENIYSFPPHLIPQEFTIDAYRRVAHVVPILQYAWHSVFVAAVCVVGNVVLASLAGYALT
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CMKFRGKKVVMGILLSVLLLPGEVTLTSQYLVIKGMGLANTLAGVAIPGVVGAINVLLMA
HHHHCCHHHHHHHHHHHHHCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHH
TACRAVPPSVLDAATVDGANTWSKIRHIVWPNIRGMASVVAVFAFIGAWDDFLWPLVVLN
HHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEC
DPDKYTLTVGMQYLSSTMSTDPREVAAGTVIALIPIIIIFASMQKVFFRGVESGGVKG
CCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]