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The map label for this gene is ysgA [H]

Identifier: 50842892

GI number: 50842892

Start: 1533749

End: 1534570

Strand: Reverse

Name: ysgA [H]

Synonym: PPA1410

Alternate gene names: 50842892

Gene position: 1534570-1533749 (Counterclockwise)

Preceding gene: 50842893

Following gene: 50842891

Centisome position: 59.94

GC content: 60.34

Gene sequence:

>822_bases
ATGGCCATGACTGGCGGGCCGAACGACGACTATTTGGGATGGGATCGCATCTCGAAGGGGTCATTGCGTTCGGCCCGTCG
TCTTTCATCTCGGCGCGGACGCGATGAGTCCGGGCTGTTCTTGGTAGAAGGTGCGCAGGCAGTTCGTGAAGCCCTAGCAT
GGCCGGGTAAAGTCAATTTGTTGGCAACCTCGGACCCAGCTCGCGATGCTGAGCATGTCGAGGTGGCTACATGTCGTGGC
GTTCGGGTCGTGGTGCTCACTGACGAGGATGTCAATGCGCTTTCTGATACCGTCACCAGTCAGGGGATCTTCGCGGTATG
TCGGCAGGTTACGCGTCGTGAGCTGCCTGACGAAGCTGTTCGTCTCGCCGTCATCTGCGCTCAAGTGCGCGATCCCGGAA
ATGCCGGAACGGTCATCCGCTGCGCCGACGCGTTTGGCGCCGATTGCGTCATCTTGACGCGGGGATCGGTTGATCCACAT
AACCCCAAGACGGTTCGCTCTTCGGTCGGGTCGATCTTTCACTTGCCCGTCGTTGTCGGTGTCGAGCTGGCCGATGCGGT
TGAGTGGGCCCATCAACACCAGATGTCGGTATTGGCGGCTGACGGGGGAGGCCATAGCCTTGACGTCGTTGCTCGGTCAG
GATGCCTCAAGCGGCCTATTGCATGGTTGATGGGTAATGAGGCGTGGGGCCTTCCTGAGGCCGATCGAGCTTTAGCTGAT
GAGATCGTGGGGGTCCCGATGTGGGGGGCCGCCGAGTCTCTCAACCTCTCAACCGCAGCCGCAGTAGTGCTGTACGCCAC
AGCAAGTGAACAGCGAGCCTGA

Upstream 100 bases:

>100_bases
CGCAAGATGCTCGCTGAGCTTGCCGTCTCCGACATTAACGCCTTCAACAGCCTGGTCGAGGTCGCTAAGGCTAACCAGCC
GCAGAACGCTGCTGCCTGAG

Downstream 100 bases:

>100_bases
AGAGTGTAGGGCGCCCGGCCATTGTTGACGGCGTCGACGCCACTAGACTTATGTCCATTAGTCGTACACGTGTGTCCGGA
ACACGCGCGTTGTCCAACGT

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MAMTGGPNDDYLGWDRISKGSLRSARRLSSRRGRDESGLFLVEGAQAVREALAWPGKVNLLATSDPARDAEHVEVATCRG
VRVVVLTDEDVNALSDTVTSQGIFAVCRQVTRRELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPH
NPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRALAD
EIVGVPMWGAAESLNLSTAAAVVLYATASEQRA

Sequences:

>Translated_273_residues
MAMTGGPNDDYLGWDRISKGSLRSARRLSSRRGRDESGLFLVEGAQAVREALAWPGKVNLLATSDPARDAEHVEVATCRG
VRVVVLTDEDVNALSDTVTSQGIFAVCRQVTRRELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPH
NPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRALAD
EIVGVPMWGAAESLNLSTAAAVVLYATASEQRA
>Mature_272_residues
AMTGGPNDDYLGWDRISKGSLRSARRLSSRRGRDESGLFLVEGAQAVREALAWPGKVNLLATSDPARDAEHVEVATCRGV
RVVVLTDEDVNALSDTVTSQGIFAVCRQVTRRELPDEAVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHN
PKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRALADE
IVGVPMWGAAESLNLSTAAAVVLYATASEQRA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=317, Percent_Identity=25.5520504731861, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1790623, Length=203, Percent_Identity=28.0788177339901, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790083, Length=169, Percent_Identity=33.7278106508876, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24666840, Length=265, Percent_Identity=25.2830188679245, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28971; Mature: 28840

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTGGPNDDYLGWDRISKGSLRSARRLSSRRGRDESGLFLVEGAQAVREALAWPGKVNL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCCEEE
LATSDPARDAEHVEVATCRGVRVVVLTDEDVNALSDTVTSQGIFAVCRQVTRRELPDEAV
EECCCCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH
RLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVVVG
HHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHCCEEEEHHHHH
VELADAVEWAHQHQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRALAD
HHHHHHHHHHHHHCEEEEEECCCCCEEHHHHHCCCHHCCHHHHCCCCCCCCCCHHHHHHH
EIVGVPMWGAAESLNLSTAAAVVLYATASEQRA
HHHCCCCCCCCCCCCCHHHEEEEEEEECCCCCC
>Mature Secondary Structure 
AMTGGPNDDYLGWDRISKGSLRSARRLSSRRGRDESGLFLVEGAQAVREALAWPGKVNL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHCCCCCEEE
LATSDPARDAEHVEVATCRGVRVVVLTDEDVNALSDTVTSQGIFAVCRQVTRRELPDEAV
EECCCCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHCCCHHHH
RLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVVVG
HHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHCCEEEEHHHHH
VELADAVEWAHQHQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRALAD
HHHHHHHHHHHHHCEEEEEECCCCCEEHHHHHCCCHHCCHHHHCCCCCCCCCCHHHHHHH
EIVGVPMWGAAESLNLSTAAAVVLYATASEQRA
HHHCCCCCCCCCCCCCHHHEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]