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The map label for this gene is atpC

Identifier: 50842718

GI number: 50842718

Start: 1345182

End: 1345622

Strand: Reverse

Name: atpC

Synonym: PPA1238

Alternate gene names: 50842718

Gene position: 1345622-1345182 (Counterclockwise)

Preceding gene: 50842719

Following gene: 50842717

Centisome position: 52.56

GC content: 60.09

Gene sequence:

>441_bases
ATGGACCACCCGCCGCTTCAAGTCAAAGTCGTCAGCGCCGATCGTGAGGTGTGGAAGGGGGAGTCGGTCAATATCATTGT
TCGGACTACCGAGGGTGATATCGGTCTGCTCCCCGGTCATGAGGCCTTTCTTGCGGCCCTCGCGCCGTGCGCGGCCCAGA
TCATCACTACGGACGGTAACCGTGAGGTCATCGCTTGCGACGGTGGCTTCGTGGCTCTGGATAATGACGGACAAGTCTCG
ATCATCACCCAGTACGCCACCCGGTCTGAGGAGATCTCGGTTGACCAGGCGCGGCGTGATCGCGATAGCCTGCGAAAGAA
GCTGAACGAGCATGAGCGTTCCGAGCAAGACCCAGAGGTCGTCCAGGACCTTACTCATCGTCTACATCTGGCCCAGGCCC
AGATCGCTGCCGCTCGACTAGCCGGAAAGCAACGCTCCTGA

Upstream 100 bases:

>100_bases
GCGACGTTGACCACATTCCCGAGCAGGCCTTCTTCAACGTTGGCAGCATGGACATGGTGATGGAGAACTGGGACAAGATG
AAGAAGGAGGGCTGAGTCCT

Downstream 100 bases:

>100_bases
GACAACTAGCCGTGGGTCGTTGTAGTGGCCGTTGCAACGACCCACGCTCCTGTCAGCGAGAAGTTAGGCTAGCCTTCGTA
GATTGCCAGAAGTGCGCCGA

Product: ATP synthase epsilon chain

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MDHPPLQVKVVSADREVWKGESVNIIVRTTEGDIGLLPGHEAFLAALAPCAAQIITTDGNREVIACDGGFVALDNDGQVS
IITQYATRSEEISVDQARRDRDSLRKKLNEHERSEQDPEVVQDLTHRLHLAQAQIAAARLAGKQRS

Sequences:

>Translated_146_residues
MDHPPLQVKVVSADREVWKGESVNIIVRTTEGDIGLLPGHEAFLAALAPCAAQIITTDGNREVIACDGGFVALDNDGQVS
IITQYATRSEEISVDQARRDRDSLRKKLNEHERSEQDPEVVQDLTHRLHLAQAQIAAARLAGKQRS
>Mature_146_residues
MDHPPLQVKVVSADREVWKGESVNIIVRTTEGDIGLLPGHEAFLAALAPCAAQIITTDGNREVIACDGGFVALDNDGQVS
IITQYATRSEEISVDQARRDRDSLRKKLNEHERSEQDPEVVQDLTHRLHLAQAQIAAARLAGKQRS

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_PROAC (Q6A8C8)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_055945.1
- ProteinModelPortal:   Q6A8C8
- SMR:   Q6A8C8
- GeneID:   2932488
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1238
- NMPDR:   fig|267747.1.peg.1222
- HOGENOM:   HBG663981
- OMA:   GHEAFLA
- ProtClustDB:   CLSK2763837
- BioCyc:   PACN267747:PPA1238-MONOMER
- BRENDA:   3.6.3.14
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 16030; Mature: 16030

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHPPLQVKVVSADREVWKGESVNIIVRTTEGDIGLLPGHEAFLAALAPCAAQIITTDGN
CCCCCEEEEEEECCCHHHCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHEEEECCCC
REVIACDGGFVALDNDGQVSIITQYATRSEEISVDQARRDRDSLRKKLNEHERSEQDPEV
CEEEEECCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
VQDLTHRLHLAQAQIAAARLAGKQRS
HHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDHPPLQVKVVSADREVWKGESVNIIVRTTEGDIGLLPGHEAFLAALAPCAAQIITTDGN
CCCCCEEEEEEECCCHHHCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHEEEECCCC
REVIACDGGFVALDNDGQVSIITQYATRSEEISVDQARRDRDSLRKKLNEHERSEQDPEV
CEEEEECCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
VQDLTHRLHLAQAQIAAARLAGKQRS
HHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA