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The map label for this gene is deoR [H]

Identifier: 50842696

GI number: 50842696

Start: 1323864

End: 1325003

Strand: Reverse

Name: deoR [H]

Synonym: PPA1215

Alternate gene names: 50842696

Gene position: 1325003-1323864 (Counterclockwise)

Preceding gene: 50842698

Following gene: 50842695

Centisome position: 51.75

GC content: 58.16

Gene sequence:

>1140_bases
TTGGATTTGGCATGTCCACCTGGTCAGGATAGCGAAATCGTCTTGCTGCGTGATCGGTATAAATACTGCACTGACTATGT
GTGGGCGACGTCTGCAATGCAACGGGACGATCGGCTCCCTATACCAGTTTCGTGGTGGCGCTCGGTATGCCTACGGATTA
GGCTCACCAGCGTGCCTTCATCGTCTCATGGTCGCACTAACGGCCGAAGAGCCCTCAGTTCTCGCCAGATGATGGCTCTG
GACGCTGCTCGGCTGTACCACCTACGAGGGCTAGATCAGGCTGCTGTAGCACAGGTCCTGCACGTGTCACGTCCCCAGGT
CTCGAAACTATTGGCAACCGCGCGTGAGTTGGGATACATCCGTACCCATGTTGTTGATCCACGCGAATCCGATCGGGAAC
TCGTGCAGACCCTGACTCAGCATTTTCGAATCGCCGGACTACTCCTCGTCAGTCCCTCCGGTCCGACGACCGGAGACCTG
CTACACGCTCTGGGTGCCGGTGCTGCCCACTTGACGAGCAACCTCGTTCTCCCCGGTGAGGAAGATGCTTCGTTCTGGTG
GTCACGGACGGTGCAAGCTTGCGCGCTGGAAATGGCCTGTGCGCCGCTGCGGCCGCGGGCTTTGTATCAATGTGCAGGCA
CGGCTCCGGGCCACGACATTCACCTCTCGATGAGAACGTTTATGGAACGCACGGATGTGGAAGTCCACCCCTGCCCAGTG
CCATTGCTACATCCCAGTGTCACGGCGCGATTGACAGCCGAAGAATCACCAGAAGCGCGGCAACACGAGAGTCGACGTGC
TAGCAGTGCCGTACTCATACTTGGCTCCTCTCGACAGGATATGGACCTTATCTGTCGTAGTGATCTGGTGACTTCGCAGG
AACGCGAACAGATCCGTAGAAATGCGGTGGGACACCTTTGTGGGCGATTCATCGATGCTGATGGACGAGTGGTGGCCCCG
ACCTTGGGTCAACGCACCTCGAGCCCCACCCTGGCTCAGCTGCGTCGGAGTCGACGCACCGTGCTCATCACTCACGGAGC
ACATCAAGTCGAGTTTGTCCGCGCTGCGACATTAAGAGGTTATGTGGACCACATCGTCACGGACGTGTCTACCGCTGAGC
TGCTTCTCAAGTACGCCTGA

Upstream 100 bases:

>100_bases
GGCCATAGCTGCGAGGGAATGTTCCCGTCGCCGTCAAGGAGGGTGCCATCCATGTCGGAGACCACCAGGCGAAGGTCGTC
TGCGGGGGCAGGGAACGGGG

Downstream 100 bases:

>100_bases
CGACGGCCCCGCGTCATGTCGTGGCCTCGCATTGGCACGAATGTGCCACCCGAAAGGATGACGGCGGCCCTACAGTGATC
GCTCTGAGCAAAGGAGTTCA

Product: sugar-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MDLACPPGQDSEIVLLRDRYKYCTDYVWATSAMQRDDRLPIPVSWWRSVCLRIRLTSVPSSSHGRTNGRRALSSRQMMAL
DAARLYHLRGLDQAAVAQVLHVSRPQVSKLLATARELGYIRTHVVDPRESDRELVQTLTQHFRIAGLLLVSPSGPTTGDL
LHALGAGAAHLTSNLVLPGEEDASFWWSRTVQACALEMACAPLRPRALYQCAGTAPGHDIHLSMRTFMERTDVEVHPCPV
PLLHPSVTARLTAEESPEARQHESRRASSAVLILGSSRQDMDLICRSDLVTSQEREQIRRNAVGHLCGRFIDADGRVVAP
TLGQRTSSPTLAQLRRSRRTVLITHGAHQVEFVRAATLRGYVDHIVTDVSTAELLLKYA

Sequences:

>Translated_379_residues
MDLACPPGQDSEIVLLRDRYKYCTDYVWATSAMQRDDRLPIPVSWWRSVCLRIRLTSVPSSSHGRTNGRRALSSRQMMAL
DAARLYHLRGLDQAAVAQVLHVSRPQVSKLLATARELGYIRTHVVDPRESDRELVQTLTQHFRIAGLLLVSPSGPTTGDL
LHALGAGAAHLTSNLVLPGEEDASFWWSRTVQACALEMACAPLRPRALYQCAGTAPGHDIHLSMRTFMERTDVEVHPCPV
PLLHPSVTARLTAEESPEARQHESRRASSAVLILGSSRQDMDLICRSDLVTSQEREQIRRNAVGHLCGRFIDADGRVVAP
TLGQRTSSPTLAQLRRSRRTVLITHGAHQVEFVRAATLRGYVDHIVTDVSTAELLLKYA
>Mature_379_residues
MDLACPPGQDSEIVLLRDRYKYCTDYVWATSAMQRDDRLPIPVSWWRSVCLRIRLTSVPSSSHGRTNGRRALSSRQMMAL
DAARLYHLRGLDQAAVAQVLHVSRPQVSKLLATARELGYIRTHVVDPRESDRELVQTLTQHFRIAGLLLVSPSGPTTGDL
LHALGAGAAHLTSNLVLPGEEDASFWWSRTVQACALEMACAPLRPRALYQCAGTAPGHDIHLSMRTFMERTDVEVHPCPV
PLLHPSVTARLTAEESPEARQHESRRASSAVLILGSSRQDMDLICRSDLVTSQEREQIRRNAVGHLCGRFIDADGRVVAP
TLGQRTSSPTLAQLRRSRRTVLITHGAHQVEFVRAATLRGYVDHIVTDVSTAELLLKYA

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=308, Percent_Identity=26.2987012987013, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787791, Length=299, Percent_Identity=25.0836120401338, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 42048; Mature: 42048

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLACPPGQDSEIVLLRDRYKYCTDYVWATSAMQRDDRLPIPVSWWRSVCLRIRLTSVPS
CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCC
SSHGRTNGRRALSSRQMMALDAARLYHLRGLDQAAVAQVLHVSRPQVSKLLATARELGYI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCHH
RTHVVDPRESDRELVQTLTQHFRIAGLLLVSPSGPTTGDLLHALGAGAAHLTSNLVLPGE
HHEECCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCHHHHHCCCCCCCC
EDASFWWSRTVQACALEMACAPLRPRALYQCAGTAPGHDIHLSMRTFMERTDVEVHPCPV
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHCCCEECCCCC
PLLHPSVTARLTAEESPEARQHESRRASSAVLILGSSRQDMDLICRSDLVTSQEREQIRR
CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHH
NAVGHLCGRFIDADGRVVAPTLGQRTSSPTLAQLRRSRRTVLITHGAHQVEFVRAATLRG
HHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
YVDHIVTDVSTAELLLKYA
HHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MDLACPPGQDSEIVLLRDRYKYCTDYVWATSAMQRDDRLPIPVSWWRSVCLRIRLTSVPS
CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCC
SSHGRTNGRRALSSRQMMALDAARLYHLRGLDQAAVAQVLHVSRPQVSKLLATARELGYI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCHH
RTHVVDPRESDRELVQTLTQHFRIAGLLLVSPSGPTTGDLLHALGAGAAHLTSNLVLPGE
HHEECCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCHHHHHCCCCCCCC
EDASFWWSRTVQACALEMACAPLRPRALYQCAGTAPGHDIHLSMRTFMERTDVEVHPCPV
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHCCCEECCCCC
PLLHPSVTARLTAEESPEARQHESRRASSAVLILGSSRQDMDLICRSDLVTSQEREQIRR
CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHH
NAVGHLCGRFIDADGRVVAPTLGQRTSSPTLAQLRRSRRTVLITHGAHQVEFVRAATLRG
HHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
YVDHIVTDVSTAELLLKYA
HHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]