Click here to switch to the map view.

The map label for this gene is 50842669

Identifier: 50842669

GI number: 50842669

Start: 1295939

End: 1296259

Strand: Direct

Name: 50842669

Synonym: PPA1189

Alternate gene names: NA

Gene position: 1295939-1296259 (Clockwise)

Preceding gene: 50842668

Following gene: 50842670

Centisome position: 50.62

GC content: 56.7

Gene sequence:

>321_bases
GTGTCCATACCCACTCTTTCGCCTGAACAGCTTTCGGCTGCTCGTGAAGCAGCGACACGGGCAAGGAGAGTCCGTGCTGA
TTTCAAAGCCAAGGTTCGCTCTGGGAATATAACGCTGTCTGAGGCTCTCGATAAGGCCGCCAACGACGAGGTACTCGCTC
ACGTCAAAGTCGTCGACTTGCTCAAGGCTTTACCACGGGTCGGGGACAAGCGCGCAGCCGAAATCATGGAGCATCTTGAG
ATTGCCCCTAACCGGCGTATCCGGGGCCTAGGACACCATCAGATTGCCGGGCTACGCGCTGAGTTTGACCAACGCTCTTA
A

Upstream 100 bases:

>100_bases
ACTAAGCGGACTAATGTGCCGATCGTCTCCATCGGGTCCCCGGTGGAGACGATCATCCGCTGTCGCGCGGAGGCGCTGCA
CACTTGAATTGGAGGGGCTC

Downstream 100 bases:

>100_bases
AGATGACGCGCGCCTCGGCGCAACTGTGTCGCTATGGACCATTAAGGTGTTCCTATGAGTAGCGTCCCCGTCATCCCTCA
GGCCCGAGGGCTTCGTCACA

Product: integration host factor

Products: NA

Alternate protein names: Integration Host Factor MihF; IHF Family Transcriptional Regulator; MihF Protein

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSIPTLSPEQLSAAREAATRARRVRADFKAKVRSGNITLSEALDKAANDEVLAHVKVVDLLKALPRVGDKRAAEIMEHLE
IAPNRRIRGLGHHQIAGLRAEFDQRS

Sequences:

>Translated_106_residues
MSIPTLSPEQLSAAREAATRARRVRADFKAKVRSGNITLSEALDKAANDEVLAHVKVVDLLKALPRVGDKRAAEIMEHLE
IAPNRRIRGLGHHQIAGLRAEFDQRS
>Mature_105_residues
SIPTLSPEQLSAAREAATRARRVRADFKAKVRSGNITLSEALDKAANDEVLAHVKVVDLLKALPRVGDKRAAEIMEHLEI
APNRRIRGLGHHQIAGLRAEFDQRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11699; Mature: 11567

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPTLSPEQLSAAREAATRARRVRADFKAKVRSGNITLSEALDKAANDEVLAHVKVVDL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHHHH
LKALPRVGDKRAAEIMEHLEIAPNRRIRGLGHHQIAGLRAEFDQRS
HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
SIPTLSPEQLSAAREAATRARRVRADFKAKVRSGNITLSEALDKAANDEVLAHVKVVDL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHHHH
LKALPRVGDKRAAEIMEHLEIAPNRRIRGLGHHQIAGLRAEFDQRS
HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA