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The map label for this gene is secD

Identifier: 50842642

GI number: 50842642

Start: 1261862

End: 1263562

Strand: Direct

Name: secD

Synonym: PPA1162

Alternate gene names: 50842642

Gene position: 1261862-1263562 (Clockwise)

Preceding gene: 50842641

Following gene: 50842643

Centisome position: 49.29

GC content: 56.85

Gene sequence:

>1701_bases
GTGGCAACGAAAAAGCGAACACACCATCCGGGTAGAACCCTGGTGATCTTCCTGGTAATCATCATTGTCATGTACGTGCT
CATGGGAGTTATGCGTACTTGGTCACCCAAGCTCGGCTTGGACCTCAGGGGAGGCACCTCCGTTACTCTGACAGCCAAGA
CCGAAGACGGCAAAGCTCCGTCAGCGACGAGTCTCGAGCAGGCCCGTCTCATCATCGGGCAGCGAGTGAACGCGCTCGGA
GTGGGCGAGTCGTCGGTCAAGACGATGGGTGATCGCAACATCGTCGTGTCGGCCCCGAACGTCGAGAGCTCCAAGCTTGT
GGAGATGGTCGGTCAGACCGCTCAACTTGGATTCCGTATGGTTTATGCAGAGGAACCAGTGAGCCAGAAGAGCCCGACCC
CCGGAAAGGCAAAGCCATCTGCACCATCTGCCCTTCCTACTGTTGAGCCCAGTGCCAGCGCCTCGGCTGCCCCAGATGCG
TCTGCTAGTTCCAAGGGTGGTACCACATCCAGTGCTTCGCAGTACAACGAGAAGGATCCTCAGTCGGCTGCCAAGATGGT
AAAGGCTGCCGAGGAGTGGAAGCCCACGCCCGAAGATCAGAAGGCCTTCGAGGACTATAAGTGTGCGAAGTCGGTTGATT
CGCCAGGTGATAAGCCACTCGTGACCTGTGATCGTGAACGCACCATGAAATATTTGTTGTCCCCGGTCGCCATTACCGGC
ACCCAGGTCGTCAGTGCTGATTCAGGCATCCCGCAGGGGCAGTTGTCCTACGTGGTTAACTTGAAATTCAATTCCATTGG
CACCACCTCGTTCAGTGACGCTACGACATACCTGTGTTCTAAGATGAGCCCACAGAATCAGTTTGCGGTCGTCCTCGATG
GTAAAGTTATCTCTTCCCCGCAGCTCAACGGCAATACCGGCACGTCCTGCCCGATTAACGGTGGCGAGGCTCAGATCTCT
GGTCACTTCACCCAAAACAGCGCGGCTGATCTCGCCAACGTCTTGAAATACGGTGCTCTTCCTCTGTCGTTCGATATTTC
CAGCGTCGACAACATTTCGCCCACCCTTGGGGGTGAGCAGCTTCGAGCTGGCATTATCGCTGGCATCATTGGCCTTATTC
TGGTCGGCGGCTACTGCTTGCTGTACTACCGGGGCCTGGGATTGGTGACCCTCGGCTCCCTCGTCATTGCCGGTATCACT
ACCTACGCAGCCATGGTGTTGCTCGGCGAGGCCGTCGGATTCACCCTTTCGCTGGCTGGTATCGCCGGCGCGATCGTGGC
CATCGGCGTGACAGCAGACTCCTTTATCGTTTACTTTGAACGCATCCGAGACGAGATCCGCGAGGGTCGTACACTACGTA
CGGCTCTTCAGACTGGTTGGGCAAAGGCCCGGGGCACGATCCTCATGGCTGACGGCGTGTCCCTATTGTCTGCCATCGTC
TTGTTCGTGCTGTCTGTAGATCAGGTGAAGGGATTTGCCTTCACTCTCGGTCTGACCACAGTGATCGACCTCATTATTTG
TTTCTTCTTCACCCATCCCATCGTGACCGTGTTGGGACGCACAAGGTTCTGGGGACAAGGTCGACGCGGTTCTGGCCTCG
AGGCGGAGCATATGGGCGTGACTGAGAGCCAGCTGCTTGGTCGGAGAAGCAGACGATCTGCTTCAAGAGCAAAGCGCACC
ATCGAGTCGGAGGAGGCCTGA

Upstream 100 bases:

>100_bases
TGATGTGCTGACCTCTCCCGAGGCGTCGGCTGTAAATGCTCATACCTCTGACGAGCAGCCGCAGGCCTGATATCCACCAA
GATCAAGGAATTTATTCGAC

Downstream 100 bases:

>100_bases
GATGACTGACGACATGAACGCCCAGACGTCGTCTGTTGCCACAAAGCGTCCTAGTGATGGCGCGACCGGCAAGAAGCGCA
AGCGTAGCTTCACTCATGCC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 565

Protein sequence:

>566_residues
MATKKRTHHPGRTLVIFLVIIIVMYVLMGVMRTWSPKLGLDLRGGTSVTLTAKTEDGKAPSATSLEQARLIIGQRVNALG
VGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQLGFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDA
SASSKGGTTSSASQYNEKDPQSAAKMVKAAEEWKPTPEDQKAFEDYKCAKSVDSPGDKPLVTCDRERTMKYLLSPVAITG
TQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQNQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQIS
GHFTQNSAADLANVLKYGALPLSFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGIT
TYAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARGTILMADGVSLLSAIV
LFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFWGQGRRGSGLEAEHMGVTESQLLGRRSRRSASRAKRT
IESEEA

Sequences:

>Translated_566_residues
MATKKRTHHPGRTLVIFLVIIIVMYVLMGVMRTWSPKLGLDLRGGTSVTLTAKTEDGKAPSATSLEQARLIIGQRVNALG
VGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQLGFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDA
SASSKGGTTSSASQYNEKDPQSAAKMVKAAEEWKPTPEDQKAFEDYKCAKSVDSPGDKPLVTCDRERTMKYLLSPVAITG
TQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQNQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQIS
GHFTQNSAADLANVLKYGALPLSFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGIT
TYAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARGTILMADGVSLLSAIV
LFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFWGQGRRGSGLEAEHMGVTESQLLGRRSRRSASRAKRT
IESEEA
>Mature_565_residues
ATKKRTHHPGRTLVIFLVIIIVMYVLMGVMRTWSPKLGLDLRGGTSVTLTAKTEDGKAPSATSLEQARLIIGQRVNALGV
GESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQLGFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDAS
ASSKGGTTSSASQYNEKDPQSAAKMVKAAEEWKPTPEDQKAFEDYKCAKSVDSPGDKPLVTCDRERTMKYLLSPVAITGT
QVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQNQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQISG
HFTQNSAADLANVLKYGALPLSFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITT
YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARGTILMADGVSLLSAIVL
FVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFWGQGRRGSGLEAEHMGVTESQLLGRRSRRSASRAKRTI
ESEEA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=329, Percent_Identity=27.6595744680851, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 59814; Mature: 59683

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKKRTHHPGRTLVIFLVIIIVMYVLMGVMRTWSPKLGLDLRGGTSVTLTAKTEDGKAP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCC
SATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQLGFRM
CCCHHHHHHHHHHCCCCEECCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEE
VYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYNEKDP
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCH
QSAAKMVKAAEEWKPTPEDQKAFEDYKCAKSVDSPGDKPLVTCDRERTMKYLLSPVAITG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCHHCCC
TQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQNQFAVVLDGKVISSP
CEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCEEECCC
QLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSFDISSVDNISPTLGGEQ
CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
LRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAAMVLLGEAVGFTLSLAG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARGTILMADGVSLLSAIV
HHHHHHEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHH
LFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFWGQGRRGSGLEAEHMGV
HHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHCCC
TESQLLGRRSRRSASRAKRTIESEEA
CHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATKKRTHHPGRTLVIFLVIIIVMYVLMGVMRTWSPKLGLDLRGGTSVTLTAKTEDGKAP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCC
SATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQLGFRM
CCCHHHHHHHHHHCCCCEECCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEE
VYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYNEKDP
EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCH
QSAAKMVKAAEEWKPTPEDQKAFEDYKCAKSVDSPGDKPLVTCDRERTMKYLLSPVAITG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCHHCCC
TQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQNQFAVVLDGKVISSP
CEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCEEECCC
QLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSFDISSVDNISPTLGGEQ
CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHH
LRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAAMVLLGEAVGFTLSLAG
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARGTILMADGVSLLSAIV
HHHHHHEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHH
LFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFWGQGRRGSGLEAEHMGV
HHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHCCC
TESQLLGRRSRRSASRAKRTIESEEA
CHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]