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The map label for this gene is yciO [C]

Identifier: 50842570

GI number: 50842570

Start: 1184764

End: 1185432

Strand: Direct

Name: yciO [C]

Synonym: PPA1092

Alternate gene names: 50842570

Gene position: 1184764-1185432 (Clockwise)

Preceding gene: 50842569

Following gene: 50842571

Centisome position: 46.28

GC content: 57.55

Gene sequence:

>669_bases
GTGTACTTTGCTGGCTCGCTGAGGCCGTTGCAGCGATACAATGATGAGGTGTCTAAGTATTTTCCGGTCCACCCGGAGAA
CCCGCAGCAGCGTTCTCTCAATCAGATCGTCGACATCCTGCACCATGGCGGTCTTATCGCCTACCCGACAGACACGGGTT
ATGCCTTCGGTGCCCGGCTAGGGAATAAGGATGCCGTGGACCGGATTCGCAAACTTCGCCAGTTATCTGACAAGCATCAC
TTCACCCTGGTCATGAGCCAGTTTGCGCAGGTTGGCCAGTATGTCCAGATGGATAACTGGGTGTTTCGTGCCGTCAGTGC
CGCTGTGCCAGGGCGATATACCTTCATTCTCAATGCCACTCGTGATGTTCCGAAGGTCATGCTGCACCCGCGAAAGAAAA
CCGTTGGGGTGCGCGTTCCCGAGCATGTGACAGCCCTGGCCCTGCTGGAAGCATTGAATGAGCCCATTGTCTCCTCCACC
CTCATCCTGCCCGGTCAGGACACACCTATGGTCGACGGTTGGCAGGTTCAAGACGAGATCGGTGACCAACTCGATGCTGT
CCTCGACTCAGGGGACTGTGGCGTCGAACCGACTACGGTGGTTGACTTCACCTCCGGTGAGGCGGTCGTCACCCGTCGGG
GTGCCGGGGACCCCTCACTTTTCGAATGA

Upstream 100 bases:

>100_bases
TCAATGGAGACGCCGTCAGCGTCGCGACGGAAATCACCCGGCCTACTCGTCTATTAGCCCTTATTGGACTAACCGAAGTA
CACGGTCGGGCGAGCGAAAT

Downstream 100 bases:

>100_bases
GGCCATAAGCCTATGGACATGGTTTGCTGACGGAGGGTTGTAAGAGAGTGCTTGGTCTGATGGGGGCGATGGAGGATGAG
GTGCGCCTCATCCGAGCTGA

Product: Sua5/YciO/YrdC domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MYFAGSLRPLQRYNDEVSKYFPVHPENPQQRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHH
FTLVMSQFAQVGQYVQMDNWVFRAVSAAVPGRYTFILNATRDVPKVMLHPRKKTVGVRVPEHVTALALLEALNEPIVSST
LILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGVEPTTVVDFTSGEAVVTRRGAGDPSLFE

Sequences:

>Translated_222_residues
MYFAGSLRPLQRYNDEVSKYFPVHPENPQQRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHH
FTLVMSQFAQVGQYVQMDNWVFRAVSAAVPGRYTFILNATRDVPKVMLHPRKKTVGVRVPEHVTALALLEALNEPIVSST
LILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGVEPTTVVDFTSGEAVVTRRGAGDPSLFE
>Mature_222_residues
MYFAGSLRPLQRYNDEVSKYFPVHPENPQQRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHH
FTLVMSQFAQVGQYVQMDNWVFRAVSAAVPGRYTFILNATRDVPKVMLHPRKKTVGVRVPEHVTALALLEALNEPIVSST
LILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGVEPTTVVDFTSGEAVVTRRGAGDPSLFE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=44.390243902439, Blast_Score=200, Evalue=6e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 24629; Mature: 24629

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYFAGSLRPLQRYNDEVSKYFPVHPENPQQRSLNQIVDILHHGGLIAYPTDTGYAFGARL
CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCC
GNKDAVDRIRKLRQLSDKHHFTLVMSQFAQVGQYVQMDNWVFRAVSAAVPGRYTFILNAT
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
RDVPKVMLHPRKKTVGVRVPEHVTALALLEALNEPIVSSTLILPGQDTPMVDGWQVQDEI
CCCHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCHHHCEEEECCCCCCCCCCEECHHHH
GDQLDAVLDSGDCGVEPTTVVDFTSGEAVVTRRGAGDPSLFE
HHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MYFAGSLRPLQRYNDEVSKYFPVHPENPQQRSLNQIVDILHHGGLIAYPTDTGYAFGARL
CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCC
GNKDAVDRIRKLRQLSDKHHFTLVMSQFAQVGQYVQMDNWVFRAVSAAVPGRYTFILNAT
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
RDVPKVMLHPRKKTVGVRVPEHVTALALLEALNEPIVSSTLILPGQDTPMVDGWQVQDEI
CCCHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCHHHCEEEECCCCCCCCCCEECHHHH
GDQLDAVLDSGDCGVEPTTVVDFTSGEAVVTRRGAGDPSLFE
HHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]