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The map label for this gene is 50842565

Identifier: 50842565

GI number: 50842565

Start: 1179574

End: 1180161

Strand: Direct

Name: 50842565

Synonym: PPA1087

Alternate gene names: NA

Gene position: 1179574-1180161 (Clockwise)

Preceding gene: 50842564

Following gene: 50842566

Centisome position: 46.07

GC content: 60.2

Gene sequence:

>588_bases
ATGGCAACGACCGGTGAGCAGCCGAGTGTTGAGATTCCCCTCGACGGCCACGCGCGTCGCGGTCAGGACGCTCTTTTCGA
GGGAGACTTTGCCCCGCTGCCTGAGGACATCGGATTCCGAGGCCCGGTCGCATCCGGTGCTGCTGGCATTAGCTATCGTC
AGCTCGATTACTGGGCGCGAACCGGCTTGGTTCGTCCGGAGATTCGCGCAGCTCGTGGCTCGGGAAGTCAGCGCCTGTAC
TCTTTCCGCGACATCCTCATGCTCAAGGTTGTTAAGCGTCTCCTTGACGCTGGGGTATCTCTTCAACAGATCCGGGTGGC
TATTGACCATCTACGCAGCAACGGGGCTGAGGACCTCTCTCGCGTCACTCTCATGAGCGACGGGGTCTCGGTGTACGAGT
GCACTAATGACAACGAAGTCATTGACCTGCTGCATGGCGGGCAGGGGATGTTCGCTATTGCGCTAGGAGGGGTGTGGCGC
GACGTTCAGGGAAGTCTTGCCGAACTGCCTAGCGAGCGTCTCAATCCGGTCGTGGACACTGAGCTCGACGAGTTCACTGC
ACGCAGAATCGCCAAGCACGCCTCCTGA

Upstream 100 bases:

>100_bases
TTCGACGCTGCTGGAGGCTTGCGCCGTAGCGTCAAGGACGTCGGCGAGGCGCCACGCTTCGTCAATGAGACCATGAGTAG
AACTGGTGAAGGGTGACGAT

Downstream 100 bases:

>100_bases
TTACGTGGTCATCGAGGGGGAGATGATCTCGCTCGGTTTCCTCCTTACGATCGGTGAGCGTGCATCAAGAGCTTCCTCCA
TGCGATGATCTCAACGAGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MATTGEQPSVEIPLDGHARRGQDALFEGDFAPLPEDIGFRGPVASGAAGISYRQLDYWARTGLVRPEIRAARGSGSQRLY
SFRDILMLKVVKRLLDAGVSLQQIRVAIDHLRSNGAEDLSRVTLMSDGVSVYECTNDNEVIDLLHGGQGMFAIALGGVWR
DVQGSLAELPSERLNPVVDTELDEFTARRIAKHAS

Sequences:

>Translated_195_residues
MATTGEQPSVEIPLDGHARRGQDALFEGDFAPLPEDIGFRGPVASGAAGISYRQLDYWARTGLVRPEIRAARGSGSQRLY
SFRDILMLKVVKRLLDAGVSLQQIRVAIDHLRSNGAEDLSRVTLMSDGVSVYECTNDNEVIDLLHGGQGMFAIALGGVWR
DVQGSLAELPSERLNPVVDTELDEFTARRIAKHAS
>Mature_194_residues
ATTGEQPSVEIPLDGHARRGQDALFEGDFAPLPEDIGFRGPVASGAAGISYRQLDYWARTGLVRPEIRAARGSGSQRLYS
FRDILMLKVVKRLLDAGVSLQQIRVAIDHLRSNGAEDLSRVTLMSDGVSVYECTNDNEVIDLLHGGQGMFAIALGGVWRD
VQGSLAELPSERLNPVVDTELDEFTARRIAKHAS

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21246; Mature: 21115

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTGEQPSVEIPLDGHARRGQDALFEGDFAPLPEDIGFRGPVASGAAGISYRQLDYWAR
CCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHH
TGLVRPEIRAARGSGSQRLYSFRDILMLKVVKRLLDAGVSLQQIRVAIDHLRSNGAEDLS
CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
RVTLMSDGVSVYECTNDNEVIDLLHGGQGMFAIALGGVWRDVQGSLAELPSERLNPVVDT
HHHHHCCCCEEEEECCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHCCHHHCCCCCCC
ELDEFTARRIAKHAS
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATTGEQPSVEIPLDGHARRGQDALFEGDFAPLPEDIGFRGPVASGAAGISYRQLDYWAR
CCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHH
TGLVRPEIRAARGSGSQRLYSFRDILMLKVVKRLLDAGVSLQQIRVAIDHLRSNGAEDLS
CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
RVTLMSDGVSVYECTNDNEVIDLLHGGQGMFAIALGGVWRDVQGSLAELPSERLNPVVDT
HHHHHCCCCEEEEECCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHCCHHHCCCCCCC
ELDEFTARRIAKHAS
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]