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The map label for this gene is yhjD [H]

Identifier: 50842566

GI number: 50842566

Start: 1180269

End: 1181525

Strand: Direct

Name: yhjD [H]

Synonym: PPA1088

Alternate gene names: 50842566

Gene position: 1180269-1181525 (Clockwise)

Preceding gene: 50842565

Following gene: 50842567

Centisome position: 46.1

GC content: 56.4

Gene sequence:

>1257_bases
GTGAAGGACACCATCACCGCCATCATGAAGCGGCCCAGCATCGCCCATCTGCTGCGAGCCCACACCCGGTTTAACCGACG
TCTTGGCAATCATTTCGCCGCGTCCATTACTTATTTCACGGTGCTGGCGATCATCCCGGTCGTTGCATTTGCCTTTGCGG
TGTTGGGATTGGTGTTAAGCCGTTTGAGCCCCTACTTGCTTAACCAGGTCGTGGATTCAGTCGTAGGCCTGGCTACCGAA
TCCAGCGATAAGCAACAGATTCGCGCCATCATTGAGAATGCCATGAAAGTCGGTGGATCTGTCTGGGCGTTCGTTGTCTC
TATCCTGACTGCGTTGTGGGCCGGAATTGGGTGGGTCGGAAACATCCGCAAGGGAATTCAAGCGGAGTGGGCTCCCGACT
TTGACATGGTTGGTGATGACCGTGGTTTCATGCGAGCCAAACTCTCCGATATGCTCACATTCCTCGGTTTGTTACTGGTG
ACCTTATTGACGATCATCACCTCCCAGGTTGGCTCCTCCATGACCGGCATGCTGGCCCGGTGGACCGGCCTCGATTCGGT
TCCTGGATACGGCTTGTTGCTAACGCTGGCAGGCCTAGTGGCGACGACGATTGCGGGTTGGCTCCTCTTCATTTTCTTAT
ACACCGTTATGCCGCGAGTCAAGACGAGTTGGCCGCCAATTCTCAAAGGGTCCCTGGCGGCTGGATTCGCCCTTGCGCTG
GTGCAGGTGGGTGCCGGATACCTCGTACGGGCCTTCAACTCTAACAAAGCTGTTCAAGCCTTCGGGTCGATCATCATTGT
CATGCTGGTCTTTGATCTCGTCGCTCGATTGATCCTCTTTATTGCGTCGTGGATTGCGACTGCGAACCAGCCGGCTATCG
ATAAGGAATGGAACGATTGCGACGAGCCGTTGCTTGGACGCGAGGATTGTATGACGGCTGAAGGGCACTGGGAAGCAGCC
TTAGCGGACCGCACCGCTAAGCAGGCGACGAAGGACGACGAGGATGATAAGGAGGTCGTTCCCCCGGGGTACACGGTCGT
TGATGGCGTTGCTCGAGAAAACAGCAATGGGGGAGACCAATGGCGTTATAAGACGGAAGACGCGGTAAGCCTCGACAACG
CACCCGCGAGTTCTGGCACGGTTGCCTCGTCGTACACCAAGCCTCACCGTTGGCCAATCATTGGTGCGAGTATTGTCGGT
GCTATCGGGGGCATGGCAGTTAGCGCCATACTCGGTCGACGCCGCGAGGAACGTTGA

Upstream 100 bases:

>100_bases
GTCATCGAGGGGGAGATGATCTCGCTCGGTTTCCTCCTTACGATCGGTGAGCGTGCATCAAGAGCTTCCTCCATGCGATG
ATCTCAACGAGGAGGCTCCC

Downstream 100 bases:

>100_bases
ACCACTGATTGCGTGTTGTGTGATGTCTGGTCCGCTCACGGCGAGGCGACTTCAACTAAGCTGCCCAGCTGTGGCCTTGG
TGGCGCTCGTCCAAGGTGTG

Product: putative tRNA-processing ribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MKDTITAIMKRPSIAHLLRAHTRFNRRLGNHFAASITYFTVLAIIPVVAFAFAVLGLVLSRLSPYLLNQVVDSVVGLATE
SSDKQQIRAIIENAMKVGGSVWAFVVSILTALWAGIGWVGNIRKGIQAEWAPDFDMVGDDRGFMRAKLSDMLTFLGLLLV
TLLTIITSQVGSSMTGMLARWTGLDSVPGYGLLLTLAGLVATTIAGWLLFIFLYTVMPRVKTSWPPILKGSLAAGFALAL
VQVGAGYLVRAFNSNKAVQAFGSIIIVMLVFDLVARLILFIASWIATANQPAIDKEWNDCDEPLLGREDCMTAEGHWEAA
LADRTAKQATKDDEDDKEVVPPGYTVVDGVARENSNGGDQWRYKTEDAVSLDNAPASSGTVASSYTKPHRWPIIGASIVG
AIGGMAVSAILGRRREER

Sequences:

>Translated_418_residues
MKDTITAIMKRPSIAHLLRAHTRFNRRLGNHFAASITYFTVLAIIPVVAFAFAVLGLVLSRLSPYLLNQVVDSVVGLATE
SSDKQQIRAIIENAMKVGGSVWAFVVSILTALWAGIGWVGNIRKGIQAEWAPDFDMVGDDRGFMRAKLSDMLTFLGLLLV
TLLTIITSQVGSSMTGMLARWTGLDSVPGYGLLLTLAGLVATTIAGWLLFIFLYTVMPRVKTSWPPILKGSLAAGFALAL
VQVGAGYLVRAFNSNKAVQAFGSIIIVMLVFDLVARLILFIASWIATANQPAIDKEWNDCDEPLLGREDCMTAEGHWEAA
LADRTAKQATKDDEDDKEVVPPGYTVVDGVARENSNGGDQWRYKTEDAVSLDNAPASSGTVASSYTKPHRWPIIGASIVG
AIGGMAVSAILGRRREER
>Mature_418_residues
MKDTITAIMKRPSIAHLLRAHTRFNRRLGNHFAASITYFTVLAIIPVVAFAFAVLGLVLSRLSPYLLNQVVDSVVGLATE
SSDKQQIRAIIENAMKVGGSVWAFVVSILTALWAGIGWVGNIRKGIQAEWAPDFDMVGDDRGFMRAKLSDMLTFLGLLLV
TLLTIITSQVGSSMTGMLARWTGLDSVPGYGLLLTLAGLVATTIAGWLLFIFLYTVMPRVKTSWPPILKGSLAAGFALAL
VQVGAGYLVRAFNSNKAVQAFGSIIIVMLVFDLVARLILFIASWIATANQPAIDKEWNDCDEPLLGREDCMTAEGHWEAA
LADRTAKQATKDDEDDKEVVPPGYTVVDGVARENSNGGDQWRYKTEDAVSLDNAPASSGTVASSYTKPHRWPIIGASIVG
AIGGMAVSAILGRRREER

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=292, Percent_Identity=31.1643835616438, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 45199; Mature: 45199

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDTITAIMKRPSIAHLLRAHTRFNRRLGNHFAASITYFTVLAIIPVVAFAFAVLGLVLS
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSPYLLNQVVDSVVGLATESSDKQQIRAIIENAMKVGGSVWAFVVSILTALWAGIGWVG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHH
NIRKGIQAEWAPDFDMVGDDRGFMRAKLSDMLTFLGLLLVTLLTIITSQVGSSMTGMLAR
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
WTGLDSVPGYGLLLTLAGLVATTIAGWLLFIFLYTVMPRVKTSWPPILKGSLAAGFALAL
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VQVGAGYLVRAFNSNKAVQAFGSIIIVMLVFDLVARLILFIASWIATANQPAIDKEWNDC
HHHCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DEPLLGREDCMTAEGHWEAALADRTAKQATKDDEDDKEVVPPGYTVVDGVARENSNGGDQ
CCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
WRYKTEDAVSLDNAPASSGTVASSYTKPHRWPIIGASIVGAIGGMAVSAILGRRREER
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]