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The map label for this gene is sdhB [H]

Identifier: 50842436

GI number: 50842436

Start: 1033805

End: 1034563

Strand: Direct

Name: sdhB [H]

Synonym: PPA0952

Alternate gene names: 50842436

Gene position: 1033805-1034563 (Clockwise)

Preceding gene: 50842435

Following gene: 50842438

Centisome position: 40.38

GC content: 60.47

Gene sequence:

>759_bases
ATGAGGGTGGAACTGGATATCTGGCGTCAGAACGGCCCTGACGCCAAAGGACATTTTGAGCACCACGTTGTCGAAGATGC
CGAGCCGGAGTGGAGCCTGCTGGAATTGCTCGACCGGCTCAACGATCAGATCGTCGAAAATGACGGTGATCCGATTGTTT
TCGAGTCTGATTGTCGTGAGGGAGTGTGCGGGTGCTGTGGGTTCATGGTCAACGGCAAGCCCCATGGTCCGCTGCCGAAT
ACCCCGGCGTGTCGTCAGCATTTGAGGGCATTCCCCCATATCACCCATTTCAAAATTGAGCCATTCCGCTCGGCAGCCTT
TCCGGTCATCCGTGACCTAGCCATCGACCGTACGAGCATGGATCACCTGATACAGGCCGGTGGAACGGTCGACGTTATGA
CGGGCACGGCCCCTGCTGCAGATTCGGTGCCGCAGCCGCATGCCGAGGCCGAGCAAGCTCTCGACTTCGCATCGTGTATT
GGATGCGGAGCGTGCGTGGCGGCTTGTCCAAATGGCGCGGCGATGCTTTTCGCCGGCGCGAAGCTGTCGCACTTGGCGAT
GATGCCGCAGGGGCGTCAGGAGCGTTCGAAGCGTGCGCGACGCATGATCAACGCCCTTGATGAGGAGTTCGGTCCGTGTT
CCCTGTATGGCGAGTGCGTTGAGGCCTGCCCGGTGAGCATTCCGTTGGTAGCCGTCGCCCGGGTCAACCGGGAGCGTTGG
CGTGCCGGATTCCGGGGAGCAGGCAGTAAGGACAACTGA

Upstream 100 bases:

>100_bases
GTGCGGTTTCGGCATGGGAGACACGTCCTGATGGCACCAAGGTGCGGCATAGCGAACCGTTGTCGTTCTCGTTGATCGAT
CTGCAGGTGAGGGATTACCG

Downstream 100 bases:

>100_bases
GCGTTTGGTCGCGTAGTGAAGGGCTGGTACCCGGAGGTTCCGGGTACCAGCCCTCGGCATGCAGTTGCGGGCGCAGTCGA
AGTCCAGGCCAATGTTGAGA

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MRVELDIWRQNGPDAKGHFEHHVVEDAEPEWSLLELLDRLNDQIVENDGDPIVFESDCREGVCGCCGFMVNGKPHGPLPN
TPACRQHLRAFPHITHFKIEPFRSAAFPVIRDLAIDRTSMDHLIQAGGTVDVMTGTAPAADSVPQPHAEAEQALDFASCI
GCGACVAACPNGAAMLFAGAKLSHLAMMPQGRQERSKRARRMINALDEEFGPCSLYGECVEACPVSIPLVAVARVNRERW
RAGFRGAGSKDN

Sequences:

>Translated_252_residues
MRVELDIWRQNGPDAKGHFEHHVVEDAEPEWSLLELLDRLNDQIVENDGDPIVFESDCREGVCGCCGFMVNGKPHGPLPN
TPACRQHLRAFPHITHFKIEPFRSAAFPVIRDLAIDRTSMDHLIQAGGTVDVMTGTAPAADSVPQPHAEAEQALDFASCI
GCGACVAACPNGAAMLFAGAKLSHLAMMPQGRQERSKRARRMINALDEEFGPCSLYGECVEACPVSIPLVAVARVNRERW
RAGFRGAGSKDN
>Mature_252_residues
MRVELDIWRQNGPDAKGHFEHHVVEDAEPEWSLLELLDRLNDQIVENDGDPIVFESDCREGVCGCCGFMVNGKPHGPLPN
TPACRQHLRAFPHITHFKIEPFRSAAFPVIRDLAIDRTSMDHLIQAGGTVDVMTGTAPAADSVPQPHAEAEQALDFASCI
GCGACVAACPNGAAMLFAGAKLSHLAMMPQGRQERSKRARRMINALDEEFGPCSLYGECVEACPVSIPLVAVARVNRERW
RAGFRGAGSKDN

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1790596, Length=199, Percent_Identity=30.6532663316583, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 27468; Mature: 27468

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVELDIWRQNGPDAKGHFEHHVVEDAEPEWSLLELLDRLNDQIVENDGDPIVFESDCRE
CCEEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHC
GVCGCCGFMVNGKPHGPLPNTPACRQHLRAFPHITHFKIEPFRSAAFPVIRDLAIDRTSM
CHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCHHHH
DHLIQAGGTVDVMTGTAPAADSVPQPHAEAEQALDFASCIGCGACVAACPNGAAMLFAGA
HHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
KLSHLAMMPQGRQERSKRARRMINALDEEFGPCSLYGECVEACPVSIPLVAVARVNRERW
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RAGFRGAGSKDN
HHCCCCCCCCCC
>Mature Secondary Structure
MRVELDIWRQNGPDAKGHFEHHVVEDAEPEWSLLELLDRLNDQIVENDGDPIVFESDCRE
CCEEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHC
GVCGCCGFMVNGKPHGPLPNTPACRQHLRAFPHITHFKIEPFRSAAFPVIRDLAIDRTSM
CHHHHHHHEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCHHHH
DHLIQAGGTVDVMTGTAPAADSVPQPHAEAEQALDFASCIGCGACVAACPNGAAMLFAGA
HHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
KLSHLAMMPQGRQERSKRARRMINALDEEFGPCSLYGECVEACPVSIPLVAVARVNRERW
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RAGFRGAGSKDN
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]