Click here to switch to the map view.

The map label for this gene is rhtA [H]

Identifier: 50842407

GI number: 50842407

Start: 1006306

End: 1007145

Strand: Reverse

Name: rhtA [H]

Synonym: PPA0923

Alternate gene names: 50842407

Gene position: 1007145-1006306 (Counterclockwise)

Preceding gene: 50842415

Following gene: 50842406

Centisome position: 39.34

GC content: 62.38

Gene sequence:

>840_bases
ATGCGCGGAGCGATCTTGGTGTTCATGGCCATCCTCTCAGTGCAGTTCGGAGGTGCCTTCGCCGCAACCCTCATCCCCCA
TGTCGGAGCCTTAGGCACCGTGGCGCTGCGGATGTCTTTGGCGGCCCTCGTCCTGGCGCCTATCGTTCGGCCCCATGTGA
AAGGCCATAGCCGCGCTGACTGGATGAGGGTGCTGGCGCTGACCATCGCCTTAGCTGGCATGAATACCGTGTTCTACTTC
TCGTTGGAACGCCTGCCCCTCGGTGTCGCGGTCACCGCCGAATTTCTGGGGCCATTGGGCATGGCAGCCCTCGGAAGCCG
ATCCCTACGTGACTGGCTCGCCATCTTGCTAGCTCTGTGCGGAGTGGTGGCAGTCTCAGGTGCGCTTACCGCCGACTGGG
CCCACCTCGATCTCCTCGGTCTGGTACTCGCCCTTGTCGCAGGTGTTTTCTGGGCCCTCTATGCCAAGTCGGCACAGTTA
ATTGGGATGAGTTGGTCGAAACTGGAGGGACTGTGGTGGGCCATCCTGCTCAGTTCGGTCGTGCTGGTACCGTCTGGCTT
CGCCACTGCGGGGACGCGCCTCGTCGAGCCATACCATCTCCTCACCGGAGCGGTTGTAGCCGTGACGTCATCGGCCCTTC
CCTACAGCCTGGAAATGTACGCGCTACGCCATATCGACACCACGGTCTACGGCATCTTGACTGGTGTCGAGCCGGCCGTC
GCGGCAGCCGCAGGATTCTTCATCCTCGGCCAGAATCTCACTGGGTCGCAAATGCTCGGGATGGCATTCGTCGTCACTGC
GGCCTGGCTCGTCATGGCCGGCGGCCGACAACGGGAGTGA

Upstream 100 bases:

>100_bases
ATGGAGTTATTCTTGCAGGACGTCCGGAACCCACCGACCACGCAGGTTCGCAGGCCTGCCCGGGTGAGGGCTTAGCAACC
ACGGCGTTATGGTGGCGTTC

Downstream 100 bases:

>100_bases
CTAGGCTGGCAGCAACGGACCACGACCTCGAAAGGACCATCGATGGACGTCAACTCCCGTGTGCTTGAACCGCGCGGCCT
GGAGAAGGTGGCCAAGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MRGAILVFMAILSVQFGGAFAATLIPHVGALGTVALRMSLAALVLAPIVRPHVKGHSRADWMRVLALTIALAGMNTVFYF
SLERLPLGVAVTAEFLGPLGMAALGSRSLRDWLAILLALCGVVAVSGALTADWAHLDLLGLVLALVAGVFWALYAKSAQL
IGMSWSKLEGLWWAILLSSVVLVPSGFATAGTRLVEPYHLLTGAVVAVTSSALPYSLEMYALRHIDTTVYGILTGVEPAV
AAAAGFFILGQNLTGSQMLGMAFVVTAAWLVMAGGRQRE

Sequences:

>Translated_279_residues
MRGAILVFMAILSVQFGGAFAATLIPHVGALGTVALRMSLAALVLAPIVRPHVKGHSRADWMRVLALTIALAGMNTVFYF
SLERLPLGVAVTAEFLGPLGMAALGSRSLRDWLAILLALCGVVAVSGALTADWAHLDLLGLVLALVAGVFWALYAKSAQL
IGMSWSKLEGLWWAILLSSVVLVPSGFATAGTRLVEPYHLLTGAVVAVTSSALPYSLEMYALRHIDTTVYGILTGVEPAV
AAAAGFFILGQNLTGSQMLGMAFVVTAAWLVMAGGRQRE
>Mature_279_residues
MRGAILVFMAILSVQFGGAFAATLIPHVGALGTVALRMSLAALVLAPIVRPHVKGHSRADWMRVLALTIALAGMNTVFYF
SLERLPLGVAVTAEFLGPLGMAALGSRSLRDWLAILLALCGVVAVSGALTADWAHLDLLGLVLALVAGVFWALYAKSAQL
IGMSWSKLEGLWWAILLSSVVLVPSGFATAGTRLVEPYHLLTGAVVAVTSSALPYSLEMYALRHIDTTVYGILTGVEPAV
AAAAGFFILGQNLTGSQMLGMAFVVTAAWLVMAGGRQRE

Specific function: Unknown

COG id: COG5006

COG function: function code R; Predicted permease, DMT superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1787033, Length=264, Percent_Identity=36.7424242424242, Blast_Score=144, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 29286; Mature: 29286

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGAILVFMAILSVQFGGAFAATLIPHVGALGTVALRMSLAALVLAPIVRPHVKGHSRAD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
WMRVLALTIALAGMNTVFYFSLERLPLGVAVTAEFLGPLGMAALGSRSLRDWLAILLALC
HHHHHHHHHHHHCCCEEEEEEHHHCCCCHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHH
GVVAVSGALTADWAHLDLLGLVLALVAGVFWALYAKSAQLIGMSWSKLEGLWWAILLSSV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHH
VLVPSGFATAGTRLVEPYHLLTGAVVAVTSSALPYSLEMYALRHIDTTVYGILTGVEPAV
HHCCCCCHHCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
AAAAGFFILGQNLTGSQMLGMAFVVTAAWLVMAGGRQRE
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRGAILVFMAILSVQFGGAFAATLIPHVGALGTVALRMSLAALVLAPIVRPHVKGHSRAD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
WMRVLALTIALAGMNTVFYFSLERLPLGVAVTAEFLGPLGMAALGSRSLRDWLAILLALC
HHHHHHHHHHHHCCCEEEEEEHHHCCCCHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHH
GVVAVSGALTADWAHLDLLGLVLALVAGVFWALYAKSAQLIGMSWSKLEGLWWAILLSSV
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHH
VLVPSGFATAGTRLVEPYHLLTGAVVAVTSSALPYSLEMYALRHIDTTVYGILTGVEPAV
HHCCCCCHHCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
AAAAGFFILGQNLTGSQMLGMAFVVTAAWLVMAGGRQRE
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]