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The map label for this gene is 50842382

Identifier: 50842382

GI number: 50842382

Start: 975792

End: 977501

Strand: Direct

Name: 50842382

Synonym: PPA0896

Alternate gene names: NA

Gene position: 975792-977501 (Clockwise)

Preceding gene: 50842381

Following gene: 50842383

Centisome position: 38.11

GC content: 62.57

Gene sequence:

>1710_bases
ATGCCGATGCGTTTGCGCACCTGGCAGCGAGAAGCGCTGGATTCATACCTGGCTACTAGCCCTCGTGACTGGCTGGTTTG
TGCTACCCCGGGAGCCGGTAAGACGACGTTCACTTTGGCCGTTGCTGCACATCTGTGGCAGGACCACGTTATCAACCGCG
TCATCGTGGTGTGCCCGACCGATCACCTGCGCTCTCAGTGGATTGCTGCGGCCCGTGGACTTGGGCTGCACTTGCGCGAC
ACAACCAATGCTGAGGCGCTCCCACCCGATTGCCACGGATGCGTTGTCACCTATGCCCAAGTCGCCCAGAAGCCGGCCCT
ACACGCAGCCCGCGCCACCAATATGCGCACCCTGGTCATCTTCGACGAGATACACCACGCCGGCGATGTCATGAGCTGGG
GATCCGGCGTCATGGAGGCCTTCTCAGGGGCCGTGCGGCGACTTGGCGTGACAGGAACTCCCTTCCGGTCTGACGAGGCC
AGGATCGCCCACGTTCGATATGAGGAAGTCAGTGACGGAGCCTTCGAGTCGGTAGCCGACTACACCTATGGATACGGCGA
TGCCCTGCGTGACGGCGTGGTGCGTCCCGTTACCTTCGCTACGTACACCGGGCGCTCCACCTGGACTGACGCTGTGGGTG
AGACCCACACGGCCATCCTTGGTGATTCCGAACTCACCAAGGCGCATGAGGAGATGGCCTGGCGCACCGCCTTGGACTCT
GACGGCGAGTGGATTGCCCATGTCATGGCGGCAGCGTGGGCACGAGTGAGCCAGCTACGCGAATCGGGCACGATCCCGCA
TGCCAAGGTGCTTATCCCAGCCTCTAATCAGAAGGTTGCTAAGGAATATGCCGAAGTCTGGCGAGACGTTACCGGCAATG
AACCGTCCGTGATCCTCTCGGAGGACGCGGCCTCGGCTAAGAAACTCGCCGCCTACCGCGATGATCCAGACAAGATTTGC
GCGGTGTGCGTGCGTCTTATCACTGAGGGTGTTGACGTCCCGGACGCAGCCGTTCTCATCTACTCGACGACGGCGTCCAC
CCCGCTATTCTTCGCCCAGATGGTGGGACGTGTGGTTCGAGCCCGGAACCGTCGCGAACGGGCCACGGTCTTTCTGCCCG
CGGTGGGACGGCTCCTCGATCTCGCGTCCCAGATGGAGGAGGTGCGCGACCACGTGATCGGTCCGCCCGCCGAGCCCGAC
CTCATTGAGGAGTTCGACACTCGTGAGCGCTCTGAGCCGGACCCTAACGCCGGTACCTGGCAGGCCGTCGCTTCCGACGC
TATCCTCGGCGAGGTCATCGACACTTATGCTCCCTCGGACGGTGGTCTCTTCGCCCTTGACGGTCTGCTCAGCCCTGAGC
AGGAGCGGGCTTTGCTAGCCCGCGACGAGAAGATTCGCGCCGAACAGGCCCGTCGCATCGCCTCGGCCCGCCGCGCGTCA
AAAGCCTCGAGGGAGGCCGAGGAGAGGCAGGCACGCCGAGAGGAGGCGGTTGCTTTACAGCGCCGCGGCGGATCCACTAT
TGACACCATCAGCGACCCGCGTGAGATGCGACGCGAAATACATCGCGCCTTACTCGATTATTCCCGCCACCATGACCTAA
CTCCGCAGGCCGGTTGGGGCCAGTTATACCGAGAAGTTCCTGGGCCGAAAAATGAATCGGCCTCGATGGACTTGCTGCGT
ACTCGGTTGGAGTGGCTGCATTCTCACTGA

Upstream 100 bases:

>100_bases
AGCTGTCGGCCGGCCGCGCTAACCTGATCGGTCGGTTCACAGTGAGCTGTTGCGGGAAGGAGAACAGGTGGCGTCACGGT
TCACGGCTCAAGGGCCTCGT

Downstream 100 bases:

>100_bases
ACCAATCAGACCGACTCTGGGAACATGCGATATTTTAATTCAGCGCATTCTAGCCTTGGTATGTGCCATGTTGCCTACGT
TCTCCTTGACTGCTGATGTT

Product: putative RNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 569; Mature: 568

Protein sequence:

>569_residues
MPMRLRTWQREALDSYLATSPRDWLVCATPGAGKTTFTLAVAAHLWQDHVINRVIVVCPTDHLRSQWIAAARGLGLHLRD
TTNAEALPPDCHGCVVTYAQVAQKPALHAARATNMRTLVIFDEIHHAGDVMSWGSGVMEAFSGAVRRLGVTGTPFRSDEA
RIAHVRYEEVSDGAFESVADYTYGYGDALRDGVVRPVTFATYTGRSTWTDAVGETHTAILGDSELTKAHEEMAWRTALDS
DGEWIAHVMAAAWARVSQLRESGTIPHAKVLIPASNQKVAKEYAEVWRDVTGNEPSVILSEDAASAKKLAAYRDDPDKIC
AVCVRLITEGVDVPDAAVLIYSTTASTPLFFAQMVGRVVRARNRRERATVFLPAVGRLLDLASQMEEVRDHVIGPPAEPD
LIEEFDTRERSEPDPNAGTWQAVASDAILGEVIDTYAPSDGGLFALDGLLSPEQERALLARDEKIRAEQARRIASARRAS
KASREAEERQARREEAVALQRRGGSTIDTISDPREMRREIHRALLDYSRHHDLTPQAGWGQLYREVPGPKNESASMDLLR
TRLEWLHSH

Sequences:

>Translated_569_residues
MPMRLRTWQREALDSYLATSPRDWLVCATPGAGKTTFTLAVAAHLWQDHVINRVIVVCPTDHLRSQWIAAARGLGLHLRD
TTNAEALPPDCHGCVVTYAQVAQKPALHAARATNMRTLVIFDEIHHAGDVMSWGSGVMEAFSGAVRRLGVTGTPFRSDEA
RIAHVRYEEVSDGAFESVADYTYGYGDALRDGVVRPVTFATYTGRSTWTDAVGETHTAILGDSELTKAHEEMAWRTALDS
DGEWIAHVMAAAWARVSQLRESGTIPHAKVLIPASNQKVAKEYAEVWRDVTGNEPSVILSEDAASAKKLAAYRDDPDKIC
AVCVRLITEGVDVPDAAVLIYSTTASTPLFFAQMVGRVVRARNRRERATVFLPAVGRLLDLASQMEEVRDHVIGPPAEPD
LIEEFDTRERSEPDPNAGTWQAVASDAILGEVIDTYAPSDGGLFALDGLLSPEQERALLARDEKIRAEQARRIASARRAS
KASREAEERQARREEAVALQRRGGSTIDTISDPREMRREIHRALLDYSRHHDLTPQAGWGQLYREVPGPKNESASMDLLR
TRLEWLHSH
>Mature_568_residues
PMRLRTWQREALDSYLATSPRDWLVCATPGAGKTTFTLAVAAHLWQDHVINRVIVVCPTDHLRSQWIAAARGLGLHLRDT
TNAEALPPDCHGCVVTYAQVAQKPALHAARATNMRTLVIFDEIHHAGDVMSWGSGVMEAFSGAVRRLGVTGTPFRSDEAR
IAHVRYEEVSDGAFESVADYTYGYGDALRDGVVRPVTFATYTGRSTWTDAVGETHTAILGDSELTKAHEEMAWRTALDSD
GEWIAHVMAAAWARVSQLRESGTIPHAKVLIPASNQKVAKEYAEVWRDVTGNEPSVILSEDAASAKKLAAYRDDPDKICA
VCVRLITEGVDVPDAAVLIYSTTASTPLFFAQMVGRVVRARNRRERATVFLPAVGRLLDLASQMEEVRDHVIGPPAEPDL
IEEFDTRERSEPDPNAGTWQAVASDAILGEVIDTYAPSDGGLFALDGLLSPEQERALLARDEKIRAEQARRIASARRASK
ASREAEERQARREEAVALQRRGGSTIDTISDPREMRREIHRALLDYSRHHDLTPQAGWGQLYREVPGPKNESASMDLLRT
RLEWLHSH

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2917 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR006935 [H]

Pfam domain/function: PF00271 Helicase_C; PF04851 ResIII [H]

EC number: NA

Molecular weight: Translated: 62914; Mature: 62783

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMRLRTWQREALDSYLATSPRDWLVCATPGAGKTTFTLAVAAHLWQDHVINRVIVVCPT
CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEEEEECC
DHLRSQWIAAARGLGLHLRDTTNAEALPPDCHGCVVTYAQVAQKPALHAARATNMRTLVI
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCEEEEE
FDEIHHAGDVMSWGSGVMEAFSGAVRRLGVTGTPFRSDEARIAHVRYEEVSDGAFESVAD
EHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHH
YTYGYGDALRDGVVRPVTFATYTGRSTWTDAVGETHTAILGDSELTKAHEEMAWRTALDS
HCCCCHHHHHCCCCCCEEEEEECCCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCC
DGEWIAHVMAAAWARVSQLRESGTIPHAKVLIPASNQKVAKEYAEVWRDVTGNEPSVILS
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEE
EDAASAKKLAAYRDDPDKICAVCVRLITEGVDVPDAAVLIYSTTASTPLFFAQMVGRVVR
CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
ARNRRERATVFLPAVGRLLDLASQMEEVRDHVIGPPAEPDLIEEFDTRERSEPDPNAGTW
HHCCHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCH
QAVASDAILGEVIDTYAPSDGGLFALDGLLSPEQERALLARDEKIRAEQARRIASARRAS
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KASREAEERQARREEAVALQRRGGSTIDTISDPREMRREIHRALLDYSRHHDLTPQAGWG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
QLYREVPGPKNESASMDLLRTRLEWLHSH
HHHHHCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PMRLRTWQREALDSYLATSPRDWLVCATPGAGKTTFTLAVAAHLWQDHVINRVIVVCPT
CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCEEEEEECC
DHLRSQWIAAARGLGLHLRDTTNAEALPPDCHGCVVTYAQVAQKPALHAARATNMRTLVI
HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCEEEEE
FDEIHHAGDVMSWGSGVMEAFSGAVRRLGVTGTPFRSDEARIAHVRYEEVSDGAFESVAD
EHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHCCCHHHHHHH
YTYGYGDALRDGVVRPVTFATYTGRSTWTDAVGETHTAILGDSELTKAHEEMAWRTALDS
HCCCCHHHHHCCCCCCEEEEEECCCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCC
DGEWIAHVMAAAWARVSQLRESGTIPHAKVLIPASNQKVAKEYAEVWRDVTGNEPSVILS
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEE
EDAASAKKLAAYRDDPDKICAVCVRLITEGVDVPDAAVLIYSTTASTPLFFAQMVGRVVR
CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
ARNRRERATVFLPAVGRLLDLASQMEEVRDHVIGPPAEPDLIEEFDTRERSEPDPNAGTW
HHCCHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCH
QAVASDAILGEVIDTYAPSDGGLFALDGLLSPEQERALLARDEKIRAEQARRIASARRAS
HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KASREAEERQARREEAVALQRRGGSTIDTISDPREMRREIHRALLDYSRHHDLTPQAGWG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
QLYREVPGPKNESASMDLLRTRLEWLHSH
HHHHHCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]