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The map label for this gene is dgoR [H]

Identifier: 50842227

GI number: 50842227

Start: 811583

End: 812290

Strand: Direct

Name: dgoR [H]

Synonym: PPA0740

Alternate gene names: 50842227

Gene position: 811583-812290 (Clockwise)

Preceding gene: 50842224

Following gene: 50842228

Centisome position: 31.7

GC content: 56.36

Gene sequence:

>708_bases
ATGGGCATGATGGATTCCTCTCTGGCCATCACGGTCTCAAACGTCTTAGGGGCACGAATTGTGAGTGGTGCCGTCACTCC
TGGGACTGTCATGAAGCTTGAGGAACTTGACTCAGAATTTGGCGTCTCCCGGTCAGTGACAAGGGAAGCTGTCAAGCTCC
TGGAAGCTCTCCATGTGGTGAGGGCTCGGCGTCGAATCGGCATTGTAGTCACTGAGGAATCGGCCTGGGACGTTAGCTCC
CCGGCTGTCATTGAGTGGTTTTTGTCCGGGCCTAGACGGGACGAAGTGATCTCCTGGATTAGCGAGCTGCGGTCGGCTGT
CGAACCGTTGGCCGTTGAACTGGCTGCTAAGCGAGCAACTCGTGAAGAGGTGACCACGATGGCTCTCGCAGTGACCGGGA
TGATTGCGGCCGCTGCTGACCGTGACCTTGACGAGTACCTGCGTTGGGACATTGATTTCCACACCGTCTTGCTCCAGGCC
TCTCATAACCCGTTGGTGGCATCCCATGTCAAGATCGTTGCTGCTGTGTTAGAGGGGCGCACCCGTCTCATGCCCTTTGA
GCCCAAACAGGAAGCCATCGGATTCCATCGCAGCATTGCTGATGCCGTAGCTGCTCATGACGCCAAAGCCGCTGCCGCAG
CGATGAGTCAGATCGTCACTGAGGCACACGAGGCTATGAGTTCCTCAATGCATGCAGCATCAAAATAA

Upstream 100 bases:

>100_bases
GGTATTTAGTAGTTGTACTCATATTTTGGGGTGCTGTCGTGGCAGAGCGCTTTTCCAGGGTGCCCGCGGCAACGAGCGAG
ACTGCGATCTCGCTAGGCTG

Downstream 100 bases:

>100_bases
CGGGGAACGAGGTGAGTCGAGTCAATGCAGAAGAAATCATATTTTTGTGGCCTGGGGCAAGTTATTAGTGCTGCTAAAGT
GCTGTTGCACGGTCCCAAAG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MGMMDSSLAITVSNVLGARIVSGAVTPGTVMKLEELDSEFGVSRSVTREAVKLLEALHVVRARRRIGIVVTEESAWDVSS
PAVIEWFLSGPRRDEVISWISELRSAVEPLAVELAAKRATREEVTTMALAVTGMIAAAADRDLDEYLRWDIDFHTVLLQA
SHNPLVASHVKIVAAVLEGRTRLMPFEPKQEAIGFHRSIADAVAAHDAKAAAAAMSQIVTEAHEAMSSSMHAASK

Sequences:

>Translated_235_residues
MGMMDSSLAITVSNVLGARIVSGAVTPGTVMKLEELDSEFGVSRSVTREAVKLLEALHVVRARRRIGIVVTEESAWDVSS
PAVIEWFLSGPRRDEVISWISELRSAVEPLAVELAAKRATREEVTTMALAVTGMIAAAADRDLDEYLRWDIDFHTVLLQA
SHNPLVASHVKIVAAVLEGRTRLMPFEPKQEAIGFHRSIADAVAAHDAKAAAAAMSQIVTEAHEAMSSSMHAASK
>Mature_234_residues
GMMDSSLAITVSNVLGARIVSGAVTPGTVMKLEELDSEFGVSRSVTREAVKLLEALHVVRARRRIGIVVTEESAWDVSSP
AVIEWFLSGPRRDEVISWISELRSAVEPLAVELAAKRATREEVTTMALAVTGMIAAAADRDLDEYLRWDIDFHTVLLQAS
HNPLVASHVKIVAAVLEGRTRLMPFEPKQEAIGFHRSIADAVAAHDAKAAAAAMSQIVTEAHEAMSSSMHAASK

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=204, Percent_Identity=31.3725490196078, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI48994961, Length=216, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25363; Mature: 25232

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMMDSSLAITVSNVLGARIVSGAVTPGTVMKLEELDSEFGVSRSVTREAVKLLEALHVV
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RARRRIGIVVTEESAWDVSSPAVIEWFLSGPRRDEVISWISELRSAVEPLAVELAAKRAT
HHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REEVTTMALAVTGMIAAAADRDLDEYLRWDIDFHTVLLQASHNPLVASHVKIVAAVLEGR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHHHCC
TRLMPFEPKQEAIGFHRSIADAVAAHDAKAAAAAMSQIVTEAHEAMSSSMHAASK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GMMDSSLAITVSNVLGARIVSGAVTPGTVMKLEELDSEFGVSRSVTREAVKLLEALHVV
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
RARRRIGIVVTEESAWDVSSPAVIEWFLSGPRRDEVISWISELRSAVEPLAVELAAKRAT
HHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REEVTTMALAVTGMIAAAADRDLDEYLRWDIDFHTVLLQASHNPLVASHVKIVAAVLEGR
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHHHCC
TRLMPFEPKQEAIGFHRSIADAVAAHDAKAAAAAMSQIVTEAHEAMSSSMHAASK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]