| Definition | Propionibacterium acnes KPA171202, complete genome. |
|---|---|
| Accession | NC_006085 |
| Length | 2,560,265 |
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The map label for this gene is nanB [H]
Identifier: 50842171
GI number: 50842171
Start: 750294
End: 751985
Strand: Reverse
Name: nanB [H]
Synonym: PPA0684
Alternate gene names: 50842171
Gene position: 751985-750294 (Counterclockwise)
Preceding gene: 50842172
Following gene: 50842170
Centisome position: 29.37
GC content: 56.32
Gene sequence:
>1692_bases ATGCACCAACGGATTTCACGCCGATCCGCATTAATCTCTGGCGGGGCAGCCTTATTCTTGAGTGTGACAGGGCAGTTCTC TGAACACTCTCCTGCACTTGCGACACAAGAGGCAGACGTACTCGAGGTGTTCAACAGAGAGAATTCGCCATCACATTTTT TCCGCATACCGTTCATGGTGTCTACGGCCAATGACACATTGGTCATAGGCTGCGATGCAAATCGCGCGACAACAGGCGAC TCCGCCGACAATATCGATGCCCTGATTCGCAGAAAACCCAATGCATCCCGTTACTCAATCTCCGACGGTTGGGAAGCCCC GTCACTGATAAAACCATTGGAGATGCGAGATTATTCGAACAAGTATGGGTACGCCCCCGCATCATCCTCCGTCATCGACG GCGCCATCATCGAGGATTCAGTTCGACATCGACTGATGATCGTCATTGATCTCTGGGCCTGGAACGGCGGAGTATTCGAA CACCTCAACGTCTCCCCAGATGGCCCCGTCAACGGTGGGCGCCCGCGAAAGTTCCCCCTGGGAGATGGCTTCGCCACCGT TGCCGGACGTGACATGCTCCTGCTCTCGACGCACAACGTCACAGGGGACGCCGACGGATTGAGGGGAAATATCAATCTGA ACATCGACCGTTCCCAATTCGACCTCGTAGCTGACCTCGACGGCCCCCGCGACAAGCACGGTCGCATTCAGATTTATGAA TTAATCGGTATACCTCGCCCGTACACCACCGCCGGAGTCGATGACTCAAATCTCGCTCTAGGACGACGATCAAGATACTC CTTGGACGACGGTTTCAACCTCTTCGAAGCAGGAATTCCTCTGTACGTGTTCCAGCACGGTTCAGCTCGCATCACTCCGA TGCGCGTCTTCTACAAGGACTCGATCCTTCAGGTCTTCAACACCAATCACATCGTGGAGATCTACTCATATGACGATGGC CGAACTTGGAACATGGGAAAACTGGTGACACGGCAGTTCAGACCCGTAGATTCTCGATACACGCTCGTCGCACCAGGTCG GTCCATTCAAATCCGCGCAGGGGAACATGCCGGACGCATCGTCGTTCCGACTTACATGATGCTACCTGCAGGAATTTCGT GCACCACTGTATACACCGACGATGGTGGGGAAACGTGGCAGCGGGGAACCCCGATGCCAGCCACTATCGACCTCCACGAA AGCGCGATCACAGAGGTTCTACCCGGCGTATTGCGCAGCTTCAACCGACATTCCGCTTCTTCCGGTGGGAAGGTGCTGAC CGCCGAGAGCGTGGATGGCGGCCATTCCTGGAGTACGCTGACTTCCGCGTTCGGCGACGACGACCAAGGCGTCGCATGCC AAGTCTCCGCGCTCATGCTGAAGCAAACCATCGCATCACCTACGACCGGGGAACAGCTCCCTGCGCTCATTGTCGTCTCA GCAGATGACCGCAGGCGTCGACATGGCATTGCCCATGTGGCAGTTGTCCATCGATCCTCGAGAACGTTCGGACCGCGCTC CGAACTTGAATGGGTGAGTCACGCCGACATCACGAGCCCACAGACCCTCTTCGCCTATTCCTCGATCGCCCAGTTGTCTG ACGGACGTGTTCTCGTGCTCTTCGAATCGTCACCTACGGACTCGTGGGCGGACGGGCTCCAACGTATGTACCTGCAGGAA CTGGCGTCCTGA
Upstream 100 bases:
>100_bases CCACTTCGCGCAGCACGCTGGAGTGATTCACACAGCAACACCAGATATCGCCCATTCAATGTAATCACGCTACGGAAGAC TTAACGTTTAGGGATTCAGC
Downstream 100 bases:
>100_bases CACCATATCGATGGGCACCAGCATCGGCCATGCTCTACCGGCATGAAGGCCCCGTGTCGTTTTTGGACTCCAGTCCTTCC TTGCCTCACCTGCGACGAGA
Product: sialidase B
Products: NA
Alternate protein names: Neuraminidase B [H]
Number of amino acids: Translated: 563; Mature: 563
Protein sequence:
>563_residues MHQRISRRSALISGGAALFLSVTGQFSEHSPALATQEADVLEVFNRENSPSHFFRIPFMVSTANDTLVIGCDANRATTGD SADNIDALIRRKPNASRYSISDGWEAPSLIKPLEMRDYSNKYGYAPASSSVIDGAIIEDSVRHRLMIVIDLWAWNGGVFE HLNVSPDGPVNGGRPRKFPLGDGFATVAGRDMLLLSTHNVTGDADGLRGNINLNIDRSQFDLVADLDGPRDKHGRIQIYE LIGIPRPYTTAGVDDSNLALGRRSRYSLDDGFNLFEAGIPLYVFQHGSARITPMRVFYKDSILQVFNTNHIVEIYSYDDG RTWNMGKLVTRQFRPVDSRYTLVAPGRSIQIRAGEHAGRIVVPTYMMLPAGISCTTVYTDDGGETWQRGTPMPATIDLHE SAITEVLPGVLRSFNRHSASSGGKVLTAESVDGGHSWSTLTSAFGDDDQGVACQVSALMLKQTIASPTTGEQLPALIVVS ADDRRRRHGIAHVAVVHRSSRTFGPRSELEWVSHADITSPQTLFAYSSIAQLSDGRVLVLFESSPTDSWADGLQRMYLQE LAS
Sequences:
>Translated_563_residues MHQRISRRSALISGGAALFLSVTGQFSEHSPALATQEADVLEVFNRENSPSHFFRIPFMVSTANDTLVIGCDANRATTGD SADNIDALIRRKPNASRYSISDGWEAPSLIKPLEMRDYSNKYGYAPASSSVIDGAIIEDSVRHRLMIVIDLWAWNGGVFE HLNVSPDGPVNGGRPRKFPLGDGFATVAGRDMLLLSTHNVTGDADGLRGNINLNIDRSQFDLVADLDGPRDKHGRIQIYE LIGIPRPYTTAGVDDSNLALGRRSRYSLDDGFNLFEAGIPLYVFQHGSARITPMRVFYKDSILQVFNTNHIVEIYSYDDG RTWNMGKLVTRQFRPVDSRYTLVAPGRSIQIRAGEHAGRIVVPTYMMLPAGISCTTVYTDDGGETWQRGTPMPATIDLHE SAITEVLPGVLRSFNRHSASSGGKVLTAESVDGGHSWSTLTSAFGDDDQGVACQVSALMLKQTIASPTTGEQLPALIVVS ADDRRRRHGIAHVAVVHRSSRTFGPRSELEWVSHADITSPQTLFAYSSIAQLSDGRVLVLFESSPTDSWADGLQRMYLQE LAS >Mature_563_residues MHQRISRRSALISGGAALFLSVTGQFSEHSPALATQEADVLEVFNRENSPSHFFRIPFMVSTANDTLVIGCDANRATTGD SADNIDALIRRKPNASRYSISDGWEAPSLIKPLEMRDYSNKYGYAPASSSVIDGAIIEDSVRHRLMIVIDLWAWNGGVFE HLNVSPDGPVNGGRPRKFPLGDGFATVAGRDMLLLSTHNVTGDADGLRGNINLNIDRSQFDLVADLDGPRDKHGRIQIYE LIGIPRPYTTAGVDDSNLALGRRSRYSLDDGFNLFEAGIPLYVFQHGSARITPMRVFYKDSILQVFNTNHIVEIYSYDDG RTWNMGKLVTRQFRPVDSRYTLVAPGRSIQIRAGEHAGRIVVPTYMMLPAGISCTTVYTDDGGETWQRGTPMPATIDLHE SAITEVLPGVLRSFNRHSASSGGKVLTAESVDGGHSWSTLTSAFGDDDQGVACQVSALMLKQTIASPTTGEQLPALIVVS ADDRRRRHGIAHVAVVHRSSRTFGPRSELEWVSHADITSPQTLFAYSSIAQLSDGRVLVLFESSPTDSWADGLQRMYLQE LAS
Specific function: Unknown
COG id: COG4409
COG function: function code G; Neuraminidase (sialidase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 BNR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002860 - InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR004124 - InterPro: IPR011040 [H]
Pfam domain/function: PF02012 BNR; PF02973 Sialidase [H]
EC number: =3.2.1.18 [H]
Molecular weight: Translated: 61684; Mature: 61684
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQRISRRSALISGGAALFLSVTGQFSEHSPALATQEADVLEVFNRENSPSHFFRIPFMV CCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEE STANDTLVIGCDANRATTGDSADNIDALIRRKPNASRYSISDGWEAPSLIKPLEMRDYSN EECCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCHHCCCHHHCCCCC KYGYAPASSSVIDGAIIEDSVRHRLMIVIDLWAWNGGVFEHLNVSPDGPVNGGRPRKFPL CCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC GDGFATVAGRDMLLLSTHNVTGDADGLRGNINLNIDRSQFDLVADLDGPRDKHGRIQIYE CCCEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEE LIGIPRPYTTAGVDDSNLALGRRSRYSLDDGFNLFEAGIPLYVFQHGSARITPMRVFYKD EECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCEEEEECCCCEEEEEEEEEHH SILQVFNTNHIVEIYSYDDGRTWNMGKLVTRQFRPVDSRYTLVAPGRSIQIRAGEHAGRI HHHHHCCCCCEEEEEECCCCCEECHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEE VVPTYMMLPAGISCTTVYTDDGGETWQRGTPMPATIDLHESAITEVLPGVLRSFNRHSAS EEEEHEECCCCCEEEEEEECCCCCHHHCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCC SGGKVLTAESVDGGHSWSTLTSAFGDDDQGVACQVSALMLKQTIASPTTGEQLPALIVVS CCCEEEEEECCCCCCCHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEEE ADDRRRRHGIAHVAVVHRSSRTFGPRSELEWVSHADITSPQTLFAYSSIAQLSDGRVLVL CCCCHHHCCCEEEEEEEECCCCCCCHHHCCCHHCCCCCCCHHHHHHHHHHHCCCCEEEEE FESSPTDSWADGLQRMYLQELAS EECCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MHQRISRRSALISGGAALFLSVTGQFSEHSPALATQEADVLEVFNRENSPSHFFRIPFMV CCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEE STANDTLVIGCDANRATTGDSADNIDALIRRKPNASRYSISDGWEAPSLIKPLEMRDYSN EECCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCHHCCCHHHCCCCC KYGYAPASSSVIDGAIIEDSVRHRLMIVIDLWAWNGGVFEHLNVSPDGPVNGGRPRKFPL CCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCC GDGFATVAGRDMLLLSTHNVTGDADGLRGNINLNIDRSQFDLVADLDGPRDKHGRIQIYE CCCEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCEEEEE LIGIPRPYTTAGVDDSNLALGRRSRYSLDDGFNLFEAGIPLYVFQHGSARITPMRVFYKD EECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCEEEEECCCCEEEEEEEEEHH SILQVFNTNHIVEIYSYDDGRTWNMGKLVTRQFRPVDSRYTLVAPGRSIQIRAGEHAGRI HHHHHCCCCCEEEEEECCCCCEECHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEE VVPTYMMLPAGISCTTVYTDDGGETWQRGTPMPATIDLHESAITEVLPGVLRSFNRHSAS EEEEHEECCCCCEEEEEEECCCCCHHHCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCC SGGKVLTAESVDGGHSWSTLTSAFGDDDQGVACQVSALMLKQTIASPTTGEQLPALIVVS CCCEEEEEECCCCCCCHHHHHHHCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCEEEEEE ADDRRRRHGIAHVAVVHRSSRTFGPRSELEWVSHADITSPQTLFAYSSIAQLSDGRVLVL CCCCHHHCCCEEEEEEEECCCCCCCHHHCCCHHCCCCCCCHHHHHHHHHHHCCCCEEEEE FESSPTDSWADGLQRMYLQELAS EECCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8759848; 11463916 [H]