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The map label for this gene is rbsD

Identifier: 50841513

GI number: 50841513

Start: 22214

End: 22597

Strand: Direct

Name: rbsD

Synonym: PPA0019

Alternate gene names: 50841513

Gene position: 22214-22597 (Clockwise)

Preceding gene: 50841512

Following gene: 50841514

Centisome position: 0.87

GC content: 57.81

Gene sequence:

>384_bases
ATGAAGAAGAGCGGACTGCTTAATCCCCAATTGTGTGCGGCGGTGGCCAGGTTGGGGCACACCCAGACCTTCGTCGTTGC
TGATGCTGGGTTGCCGATTCCTCATGAGGTCCCGGTGATTGACCTCGCTGTGGTGCTGGGAACCCCGAGGTTCCAGGAGG
TTTTCGACGCCATCCTCGACGAAGTGGTCGTGGACGGAGCCACGATTGCTCACGAGGCTCTCGGGCATGAACCGGAATCT
TGGGTGAGAGAACGGATTGAAGAGGTTCACACGGTCAGTCATGAGGACCTCAAAAAGGCGCTGCCCAACGTCTCTTTCGT
CGTGCGGACGGGAGAGACGACGCCGTATTCCAACGTCATCGTGCGTTGTGGAGTACCGTTTTGA

Upstream 100 bases:

>100_bases
TTGCTACCGCGGTGGCGACTTTGACGGTGACCAAGCCGGGGGCACAAGCCTCCTACCCCAGTGCTGACGAGGTGGAGAGC
ATTCGTCGAGGAGAACACGC

Downstream 100 bases:

>100_bases
TGGACGTGCGACACCTCGATCAGATCCCGATTTGGTTCTTCGGAGCGTGATCCAGTAGAGTTTTTACTCGCGGTCGGGAA
GCCGGTCGAGGTTTGGGCCT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKKSGLLNPQLCAAVARLGHTQTFVVADAGLPIPHEVPVIDLAVVLGTPRFQEVFDAILDEVVVDGATIAHEALGHEPES
WVRERIEEVHTVSHEDLKKALPNVSFVVRTGETTPYSNVIVRCGVPF

Sequences:

>Translated_127_residues
MKKSGLLNPQLCAAVARLGHTQTFVVADAGLPIPHEVPVIDLAVVLGTPRFQEVFDAILDEVVVDGATIAHEALGHEPES
WVRERIEEVHTVSHEDLKKALPNVSFVVRTGETTPYSNVIVRCGVPF
>Mature_127_residues
MKKSGLLNPQLCAAVARLGHTQTFVVADAGLPIPHEVPVIDLAVVLGTPRFQEVFDAILDEVVVDGATIAHEALGHEPES
WVRERIEEVHTVSHEDLKKALPNVSFVVRTGETTPYSNVIVRCGVPF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=37.410071942446, Blast_Score=98, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_PROAC (Q6ABP6)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_054740.1
- HSSP:   P36946
- ProteinModelPortal:   Q6ABP6
- SMR:   Q6ABP6
- GeneID:   2931644
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA0019
- NMPDR:   fig|267747.1.peg.17
- HOGENOM:   HBG510403
- OMA:   WVRERIE
- ProtClustDB:   PRK11797
- BioCyc:   PACN267747:PPA0019-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 13814; Mature: 13814

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 94-94

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSGLLNPQLCAAVARLGHTQTFVVADAGLPIPHEVPVIDLAVVLGTPRFQEVFDAILD
CCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
EVVVDGATIAHEALGHEPESWVRERIEEVHTVSHEDLKKALPNVSFVVRTGETTPYSNVI
HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCEE
VRCGVPF
EECCCCC
>Mature Secondary Structure
MKKSGLLNPQLCAAVARLGHTQTFVVADAGLPIPHEVPVIDLAVVLGTPRFQEVFDAILD
CCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
EVVVDGATIAHEALGHEPESWVRERIEEVHTVSHEDLKKALPNVSFVVRTGETTPYSNVI
HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCEE
VRCGVPF
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA