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The map label for this gene is rbsC [H]

Identifier: 50841510

GI number: 50841510

Start: 19324

End: 20301

Strand: Direct

Name: rbsC [H]

Synonym: PPA0016

Alternate gene names: 50841510

Gene position: 19324-20301 (Clockwise)

Preceding gene: 50841509

Following gene: 50841511

Centisome position: 0.75

GC content: 54.19

Gene sequence:

>978_bases
GTGACTACTACATCAACCGCTACTACGCAAAGACCGTCAGTTGGCAGGAAAGTTGGTTCCTGGTCCCTTAATCACGGTGC
TCTCGTAGGCCTTATTATTCTCTGTATTGCTCTGTTTATTGCGACTCCAGTATTCCTCACTGTGCCGAATATCATTAATA
TCGGAATCCAAGCCGCGGTGGTGGCGATTATGGCCTTCGGTATGACCTTCGTCATCGTTACCTCCGGCATTGATTTGTCT
GTGGGTTCGGTCGCAGCTCTTTCAGCCATGGTCTCAGCATGGATGTTCTCTAACGCTGGTCTGCCAAGCTGGCTCACCCT
TATCATCGGCCTGCTAATCGGACTGCTTGCTGGAGCTGTTTCCGGTCTGGCCATCGCCTATGGCAAGTTGCCTGCCTTTA
TCGCCACGCTGGCCATGATGAGCGTCGCACGCGGACTAACTCTTGTTATCTCTGGCGGCACCCCCGTCGCCACCTCTGAC
GCAGTGAACCAGCTGGGTGCTGATGTTGGGCCAATTCCGGTGCCTGTCATCATGCTCGCCCTAGCCGGTGTGGTGTGCTG
GTTCATGCTGTCGCGTACGGTGCTGGGGCGTTCTCTCTATGCCATTGGTGGTAACGAAGAGGCTGCTCGTCTCTCCGGTA
TTCCGGTGCGTCGCATCCTCGTCACTGTCTACGCTCTGGCCGGTGTTTTTGCTGGCCTAGCTGGTCTGGTGTTGGCTGGT
CGGCTCTCCTCAGCCCAGCCTCAGGCGGGGTTCGGGTATGAGCTTGATGCCATTGCAGCTGTCGTTATTGGTGGAGCCTC
ATTGTCAGGAGGTTCTGGAAAGGCAAGCGGCACTTTTATTGGTGCTGTTTTACTAGCCGTTATTCGTAACGGTCTTAATA
TTCTTAACGTTTCCTCGTTCTGGCAGCAGGTTGTTATCGGCTGCGTTATCGCGCTGGCTGTCGGATTCGATGTCTTCAGG
TCTAAGAAAGAATCCTGA

Upstream 100 bases:

>100_bases
GATGAAAAAACAGGATGAATCCCGTATTCATTCTTAATGCCGAAAAGTACTGAATGTCGTCTTCTCTCGATCGGTGATGA
TCTGGAAAGGAAAAATCATC

Downstream 100 bases:

>100_bases
ATAAGCGCTCATGCACGAACTATTGTGTAACAAGAGAAAGGTAGAACAATGAAGTTCAAGTCTACTAAGGTGCTCGCGAC
GGCAGTCGCCGTGACGATAA

Product: ribose ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTTTSTATTQRPSVGRKVGSWSLNHGALVGLIILCIALFIATPVFLTVPNIINIGIQAAVVAIMAFGMTFVIVTSGIDLS
VGSVAALSAMVSAWMFSNAGLPSWLTLIIGLLIGLLAGAVSGLAIAYGKLPAFIATLAMMSVARGLTLVISGGTPVATSD
AVNQLGADVGPIPVPVIMLALAGVVCWFMLSRTVLGRSLYAIGGNEEAARLSGIPVRRILVTVYALAGVFAGLAGLVLAG
RLSSAQPQAGFGYELDAIAAVVIGGASLSGGSGKASGTFIGAVLLAVIRNGLNILNVSSFWQQVVIGCVIALAVGFDVFR
SKKES

Sequences:

>Translated_325_residues
MTTTSTATTQRPSVGRKVGSWSLNHGALVGLIILCIALFIATPVFLTVPNIINIGIQAAVVAIMAFGMTFVIVTSGIDLS
VGSVAALSAMVSAWMFSNAGLPSWLTLIIGLLIGLLAGAVSGLAIAYGKLPAFIATLAMMSVARGLTLVISGGTPVATSD
AVNQLGADVGPIPVPVIMLALAGVVCWFMLSRTVLGRSLYAIGGNEEAARLSGIPVRRILVTVYALAGVFAGLAGLVLAG
RLSSAQPQAGFGYELDAIAAVVIGGASLSGGSGKASGTFIGAVLLAVIRNGLNILNVSSFWQQVVIGCVIALAVGFDVFR
SKKES
>Mature_324_residues
TTTSTATTQRPSVGRKVGSWSLNHGALVGLIILCIALFIATPVFLTVPNIINIGIQAAVVAIMAFGMTFVIVTSGIDLSV
GSVAALSAMVSAWMFSNAGLPSWLTLIIGLLIGLLAGAVSGLAIAYGKLPAFIATLAMMSVARGLTLVISGGTPVATSDA
VNQLGADVGPIPVPVIMLALAGVVCWFMLSRTVLGRSLYAIGGNEEAARLSGIPVRRILVTVYALAGVFAGLAGLVLAGR
LSSAQPQAGFGYELDAIAAVVIGGASLSGGSGKASGTFIGAVLLAVIRNGLNILNVSSFWQQVVIGCVIALAVGFDVFRS
KKES

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=328, Percent_Identity=46.6463414634146, Blast_Score=235, Evalue=3e-63,
Organism=Escherichia coli, GI1790524, Length=293, Percent_Identity=41.296928327645, Blast_Score=184, Evalue=7e-48,
Organism=Escherichia coli, GI145693152, Length=326, Percent_Identity=37.7300613496933, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1788896, Length=329, Percent_Identity=34.3465045592705, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI87082395, Length=305, Percent_Identity=37.0491803278689, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=48.1751824817518, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788471, Length=315, Percent_Identity=35.8730158730159, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1787793, Length=282, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693214, Length=244, Percent_Identity=37.7049180327869, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787794, Length=290, Percent_Identity=32.4137931034483, Blast_Score=101, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32900; Mature: 32768

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTSTATTQRPSVGRKVGSWSLNHGALVGLIILCIALFIATPVFLTVPNIINIGIQAAV
CCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
VAIMAFGMTFVIVTSGIDLSVGSVAALSAMVSAWMFSNAGLPSWLTLIIGLLIGLLAGAV
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SGLAIAYGKLPAFIATLAMMSVARGLTLVISGGTPVATSDAVNQLGADVGPIPVPVIMLA
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHH
LAGVVCWFMLSRTVLGRSLYAIGGNEEAARLSGIPVRRILVTVYALAGVFAGLAGLVLAG
HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSSAQPQAGFGYELDAIAAVVIGGASLSGGSGKASGTFIGAVLLAVIRNGLNILNVSSF
HCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHH
WQQVVIGCVIALAVGFDVFRSKKES
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTTSTATTQRPSVGRKVGSWSLNHGALVGLIILCIALFIATPVFLTVPNIINIGIQAAV
CCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
VAIMAFGMTFVIVTSGIDLSVGSVAALSAMVSAWMFSNAGLPSWLTLIIGLLIGLLAGAV
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SGLAIAYGKLPAFIATLAMMSVARGLTLVISGGTPVATSDAVNQLGADVGPIPVPVIMLA
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHH
LAGVVCWFMLSRTVLGRSLYAIGGNEEAARLSGIPVRRILVTVYALAGVFAGLAGLVLAG
HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLSSAQPQAGFGYELDAIAAVVIGGASLSGGSGKASGTFIGAVLLAVIRNGLNILNVSSF
HCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHH
WQQVVIGCVIALAVGFDVFRSKKES
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]