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The map label for this gene is yciR [C]

Identifier: 50086545

GI number: 50086545

Start: 3511012

End: 3513042

Strand: Reverse

Name: yciR [C]

Synonym: ACIAD3594

Alternate gene names: 50086545

Gene position: 3513042-3511012 (Counterclockwise)

Preceding gene: 50086546

Following gene: 50086536

Centisome position: 97.62

GC content: 35.16

Gene sequence:

>2031_bases
GTGAAAAATATTTTTAATTTAGAAAATACGGTTAATAGTGTCACATATTTAAATCAAGACCTGACATTTCGTTGGGGAAA
TTTATCATTCTTTGAATCAATTGGTAAAAAAGTCTCAGAAATTCAAAATATTCCAATATTAGAGATAATTCCACATGACT
GGTGCAAACATATCCAACCATTATTAGCACCTGCCTTAGAAGGACATGCAGCCCAGATAAGTTGGCAAAGCCCTTTTTTG
GACACGTTTATTTCATATAAGACGGTATTTGTAGCACCCCAATATTCTATCGATCAGAGAATCGATGGGATTTTAATCAG
TGTATTTGAGCTGACAGAACAATTAAGTATCCATCAACAACTTGAAAAAATACTTAAGGATTTTGAAAATTATAAGTTGG
CAATTGATGCACATTCTATTGTTGCAATCACAGATAATCGTGGGGTAATTACCCATGTAAATGAAAAATTTTGTGATATT
TCACAATATGAATATTATGAATTAGTAGGGACAACACATAAAATTATTAATTCTGGATTTCATCCACGTAGTTTTTTTAA
ACAAATGTGGAAAACGATTGCACAAGGTAATATCTGGAAAGGTGAGATTTGTAATAGGACTAAGCAGGGTAAATTATATT
GGGTCGATACGACGATTGTACCGTTAAAGGATAATGACGGATTACTTAAGAACTATATTTCAATTCGGACAGATATTACC
CAGTTGAAATCATCTGAAGATCACGCCAAATATATGGCACTTTATGATGAATTAACGGGTTTGCCGAATCGCCGTTATGT
CAAAGATCGTTTAAAAAAGGTGATCGAATTATCCAAGGAAAGTCAGCATCATAGTGCAATTCTAATGATGGATCTGGATA
ATTTTAAAACAGTGAACGATACACTTGGTCATGATTATGGCGATAATCTACTCAAAATGGTGGCGAATCGTGTCAAAAAA
TGTGTCCGTGAAACAGAAACTATCGCTCGTCTGGGTGGAGATGAGCTCTTAATTATTTTGTCCAATTTAAGTGAAAATGA
AGAGATCGCGCAAGCTCAGGCACAAGCAATTGCTGAACGGATATCAAATTCAATTTATCAACCTTTTAATCTAGAAAATC
AGGTTATTCAAACCAGTGTCAGTATTGGGATTTTTGTTTTTAATGATGCCTCAATACCTCAAAATGAGCTTTTAAAATAC
GCAGATATGGCGCTTTATCAGGCAAAAGCCAATGGTAAAAACTGTATTTGTACATTTGATCCTCTGATGGAGCAAAACGT
CATTTCAAGAGCTTCTTTGCTTTCAGATTTACGTCAGGCATTGATACGAGATGAGTTTGAATTGTACTATCAGCCGATAG
TCGATCAGCATAAAAAGATCATTGGTTATGAAGCATTATTACGCTGGATTCATCCTGTTCGTGGTCTGATATTGCCAGGC
GAGTTTATCGAGCAAGCAGAAAAATCTGATCTGATTCATCTGATTGGTAATCGTGTATTGATGATGGCTTGTCAGCAGTT
ATATCAATGGAGTCAAAATACTGACTCGGCGCATTGGACACTATCAGTCAATATCAGTGTACAGCAATTTAGAAAATCAG
ATTTTGAAGAAAATATCATTCAGATTATTCAGGATTCCAAAGCCAACCCATATCGTTTACGTCTTGAACTGACTGAAAGC
ATGTTTTATACAGACATGCAAAGTTCGATTGAAAAAATGAAAAAACTGATTGAAATTGGTGTTCGTTTTTCAATGGATGA
TTTTGGCACAGGCTATTCGTCTTTGAATTACCTCAAGCTATTGCCTCTAGATCAGCTCAAAATTGATCGTTCTTTTGTAA
AAAATATGGTGGATAATTCAAGAGATATTGCGATTGTGAATACTATTATCAATTTGGCACATATTTTGGATTTAAATGTG
GTTGCCGAAGGGGTCGAAACCGAAGAACAATTTATTTGTCTAACCCAAAACCAGTGTTTTACCTTTCAGGGCTACCTGTT
TGGTCGCCCTTTACCCATTGACAGTATATAG

Upstream 100 bases:

>100_bases
TTAGATATAAAAAAATTCATATTGAATAAGTGCGTTATAAAAATATATATGTGGTAATATAATGATTAAATAGATTTTTT
AAAAATACTGTTGTCATAAA

Downstream 100 bases:

>100_bases
TGCTTAATCCAGTTCTTCATTGACTTGCCCATAGATCAACAGGGTAAATACACCTGTTCCACCGATAATATTGCCCAGTG
TGGTGGGAATAAGAAACTGA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 676; Mature: 676

Protein sequence:

>676_residues
MKNIFNLENTVNSVTYLNQDLTFRWGNLSFFESIGKKVSEIQNIPILEIIPHDWCKHIQPLLAPALEGHAAQISWQSPFL
DTFISYKTVFVAPQYSIDQRIDGILISVFELTEQLSIHQQLEKILKDFENYKLAIDAHSIVAITDNRGVITHVNEKFCDI
SQYEYYELVGTTHKIINSGFHPRSFFKQMWKTIAQGNIWKGEICNRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDIT
QLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKK
CVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKY
ADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHKKIIGYEALLRWIHPVRGLILPG
EFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTES
MFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNV
VAEGVETEEQFICLTQNQCFTFQGYLFGRPLPIDSI

Sequences:

>Translated_676_residues
MKNIFNLENTVNSVTYLNQDLTFRWGNLSFFESIGKKVSEIQNIPILEIIPHDWCKHIQPLLAPALEGHAAQISWQSPFL
DTFISYKTVFVAPQYSIDQRIDGILISVFELTEQLSIHQQLEKILKDFENYKLAIDAHSIVAITDNRGVITHVNEKFCDI
SQYEYYELVGTTHKIINSGFHPRSFFKQMWKTIAQGNIWKGEICNRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDIT
QLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKK
CVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKY
ADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHKKIIGYEALLRWIHPVRGLILPG
EFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTES
MFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNV
VAEGVETEEQFICLTQNQCFTFQGYLFGRPLPIDSI
>Mature_676_residues
MKNIFNLENTVNSVTYLNQDLTFRWGNLSFFESIGKKVSEIQNIPILEIIPHDWCKHIQPLLAPALEGHAAQISWQSPFL
DTFISYKTVFVAPQYSIDQRIDGILISVFELTEQLSIHQQLEKILKDFENYKLAIDAHSIVAITDNRGVITHVNEKFCDI
SQYEYYELVGTTHKIINSGFHPRSFFKQMWKTIAQGNIWKGEICNRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDIT
QLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKK
CVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKY
ADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHKKIIGYEALLRWIHPVRGLILPG
EFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTES
MFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNV
VAEGVETEEQFICLTQNQCFTFQGYLFGRPLPIDSI

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=549, Percent_Identity=31.511839708561, Blast_Score=275, Evalue=6e-75,
Organism=Escherichia coli, GI87081921, Length=441, Percent_Identity=31.5192743764172, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=28.169014084507, Blast_Score=162, Evalue=5e-41,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=32.5, Blast_Score=132, Evalue=9e-32,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=36.5145228215768, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87082096, Length=423, Percent_Identity=27.1867612293144, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1786507, Length=234, Percent_Identity=33.7606837606838, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1787055, Length=466, Percent_Identity=26.6094420600858, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=33.0508474576271, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=32.9268292682927, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788381, Length=452, Percent_Identity=24.7787610619469, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=32.4894514767932, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1788849, Length=251, Percent_Identity=31.4741035856574, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87081977, Length=224, Percent_Identity=30.3571428571429, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI145693134, Length=194, Percent_Identity=33.5051546391753, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=33.7142857142857, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1786584, Length=202, Percent_Identity=28.2178217821782, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87082007, Length=196, Percent_Identity=29.0816326530612, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789453, Length=141, Percent_Identity=34.7517730496454, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787816, Length=178, Percent_Identity=32.0224719101124, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=29.5336787564767, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=187, Percent_Identity=26.2032085561497, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=32.2784810126582, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=28.7425149700599, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=150, Percent_Identity=28.6666666666667, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 77845; Mature: 77845

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIFNLENTVNSVTYLNQDLTFRWGNLSFFESIGKKVSEIQNIPILEIIPHDWCKHIQP
CCCCCCHHHHHHHHHEECCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
LLAPALEGHAAQISWQSPFLDTFISYKTVFVAPQYSIDQRIDGILISVFELTEQLSIHQQ
HHHHHHCCCEEEEEECCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
LEKILKDFENYKLAIDAHSIVAITDNRGVITHVNEKFCDISQYEYYELVGTTHKIINSGF
HHHHHHHHCCCEEEEECCEEEEEECCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHCCC
HPRSFFKQMWKTIAQGNIWKGEICNRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDIT
CHHHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHH
QLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVND
HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHH
TLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAER
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
ISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANGKNCICTFD
HHHHCCCCCCCCHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
PLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHKKIIGYEALLRWIHPVRGLILPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCH
EFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHHHCCHHHHHH
QIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKL
HHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEEE
LPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCF
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEE
TFQGYLFGRPLPIDSI
EEECEEECCCCCCCCC
>Mature Secondary Structure
MKNIFNLENTVNSVTYLNQDLTFRWGNLSFFESIGKKVSEIQNIPILEIIPHDWCKHIQP
CCCCCCHHHHHHHHHEECCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
LLAPALEGHAAQISWQSPFLDTFISYKTVFVAPQYSIDQRIDGILISVFELTEQLSIHQQ
HHHHHHCCCEEEEEECCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
LEKILKDFENYKLAIDAHSIVAITDNRGVITHVNEKFCDISQYEYYELVGTTHKIINSGF
HHHHHHHHCCCEEEEECCEEEEEECCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHCCC
HPRSFFKQMWKTIAQGNIWKGEICNRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDIT
CHHHHHHHHHHHHHCCCCCCCHHCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHH
QLKSSEDHAKYMALYDELTGLPNRRYVKDRLKKVIELSKESQHHSAILMMDLDNFKTVND
HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHH
TLGHDYGDNLLKMVANRVKKCVRETETIARLGGDELLIILSNLSENEEIAQAQAQAIAER
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
ISNSIYQPFNLENQVIQTSVSIGIFVFNDASIPQNELLKYADMALYQAKANGKNCICTFD
HHHHCCCCCCCCHHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
PLMEQNVISRASLLSDLRQALIRDEFELYYQPIVDQHKKIIGYEALLRWIHPVRGLILPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCH
EFIEQAEKSDLIHLIGNRVLMMACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHHHCCHHHHHH
QIIQDSKANPYRLRLELTESMFYTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKL
HHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEEE
LPLDQLKIDRSFVKNMVDNSRDIAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCF
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEE
TFQGYLFGRPLPIDSI
EEECEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]