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The map label for this gene is yocS [H]

Identifier: 50086535

GI number: 50086535

Start: 3502201

End: 3503202

Strand: Reverse

Name: yocS [H]

Synonym: ACIAD3583

Alternate gene names: 50086535

Gene position: 3503202-3502201 (Counterclockwise)

Preceding gene: 50086536

Following gene: 50086521

Centisome position: 97.35

GC content: 46.61

Gene sequence:

>1002_bases
ATGCAAATTGTAAAAATTAAGATGGAGCGCGGACGAATGATGGCATTGTTGCGATTTACCGCTTTTGTGCAAAAAACCTT
TGCACTGTGGGTGGTGGTCTTTGCTGCGCTGGCGTTCTGGATGCCAGATGTATTTGTGTGGCTGAAAGCCTATATTCCTT
GGATGCTGGGGATCATTATGCTTGGGATGGGCATGACCATGTCCTTACAAGATTTTCAGGGAATATTGCGCTATCCCAAA
GCTGTGCTGATTGGGGTGGTGGCGCAGTTTGTGGTGATGCCAGGGTTGGCCTTTTTACTGTGTCAGTTATTTCAGTTGCC
TTCAGAGATCGCGATTGGTGTGATTTTGGTGGGATGCTGTCCAGGCGGAACGGCATCGAATGTCATTACCTATATGGCGC
GAGGGAATATTGCACTCTCAGTGGCATGCACCAGCGTCTCGACCCTGCTTGCACCGCTTTTGACGCCAGCCATTTTTTAT
CTGCTGGCCAGTCAATGGATTCAGATCGATGCAATGTCGATGTTTGTATCGATTTTACAGGTGATTTTGTTTCCTATCCT
GATTGGGCTACTGCTACGACGTTTCTTTGCTCGACAGGTAAATCGATATATCGAGGTGATGCCACTGATTTCGGTATTTG
CAATTGTAGCCATTGTTGCAGCAATTATTGGAGCGAGCAAAGCTGCGATATTACAATCAGGCGCGTTAATACTTGCAGTA
GTTATGTTGCACAATGGTTTGGGTTTCCTGATTGGCTATTGGGCAAGTCGCTGGTTAAGGCTGTCCGATTACGATAGCAA
AGCCATTGCAATTGAAGTGGGGATGCAAAATTCTGGACTGGGCGTAGCTTTGGCCGCCGTACATTTTGCTGCATCACCTA
TTACTGCAGTGCCGAGTGCTATTTTTAGTTTGTGGCACAACATTTCAGGCGCAATGCTGGCAACGTATTGGGCTCGTCAA
AGCAAGCAAAAAACTCAGCAAGAGCCTAGAGATAATTTTTGA

Upstream 100 bases:

>100_bases
TGGCTCGCTACAACATGCTTGGCAGGAAATGCTGGCATCGGGCGTTCAACGTATTTCATCACGCAATATTTTGGTTTAAG
GTACGCACCCTTACGGATTA

Downstream 100 bases:

>100_bases
TTTGCATACCATTGCTCAAGCTCATGCTCAGACAAAATTTCAAAACCATGCTGCTTGAGCAGTGCCGCTGTAACGCCAAG
ACCTGTCCGTTTCTGGCCAT

Product: sodium/bile acid transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MQIVKIKMERGRMMALLRFTAFVQKTFALWVVVFAALAFWMPDVFVWLKAYIPWMLGIIMLGMGMTMSLQDFQGILRYPK
AVLIGVVAQFVVMPGLAFLLCQLFQLPSEIAIGVILVGCCPGGTASNVITYMARGNIALSVACTSVSTLLAPLLTPAIFY
LLASQWIQIDAMSMFVSILQVILFPILIGLLLRRFFARQVNRYIEVMPLISVFAIVAIVAAIIGASKAAILQSGALILAV
VMLHNGLGFLIGYWASRWLRLSDYDSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSAIFSLWHNISGAMLATYWARQ
SKQKTQQEPRDNF

Sequences:

>Translated_333_residues
MQIVKIKMERGRMMALLRFTAFVQKTFALWVVVFAALAFWMPDVFVWLKAYIPWMLGIIMLGMGMTMSLQDFQGILRYPK
AVLIGVVAQFVVMPGLAFLLCQLFQLPSEIAIGVILVGCCPGGTASNVITYMARGNIALSVACTSVSTLLAPLLTPAIFY
LLASQWIQIDAMSMFVSILQVILFPILIGLLLRRFFARQVNRYIEVMPLISVFAIVAIVAAIIGASKAAILQSGALILAV
VMLHNGLGFLIGYWASRWLRLSDYDSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSAIFSLWHNISGAMLATYWARQ
SKQKTQQEPRDNF
>Mature_333_residues
MQIVKIKMERGRMMALLRFTAFVQKTFALWVVVFAALAFWMPDVFVWLKAYIPWMLGIIMLGMGMTMSLQDFQGILRYPK
AVLIGVVAQFVVMPGLAFLLCQLFQLPSEIAIGVILVGCCPGGTASNVITYMARGNIALSVACTSVSTLLAPLLTPAIFY
LLASQWIQIDAMSMFVSILQVILFPILIGLLLRRFFARQVNRYIEVMPLISVFAIVAIVAAIIGASKAAILQSGALILAV
VMLHNGLGFLIGYWASRWLRLSDYDSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSAIFSLWHNISGAMLATYWARQ
SKQKTQQEPRDNF

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=254, Percent_Identity=27.5590551181102, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI4506971, Length=291, Percent_Identity=29.8969072164948, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI37537552, Length=285, Percent_Identity=23.5087719298246, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI215422368, Length=228, Percent_Identity=27.1929824561404, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI58219066, Length=286, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=27.1929824561404, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=27.1929824561404, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI24308414, Length=262, Percent_Identity=28.6259541984733, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115533076, Length=109, Percent_Identity=35.7798165137615, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 36531; Mature: 36531

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIVKIKMERGRMMALLRFTAFVQKTFALWVVVFAALAFWMPDVFVWLKAYIPWMLGIIM
CCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGMGMTMSLQDFQGILRYPKAVLIGVVAQFVVMPGLAFLLCQLFQLPSEIAIGVILVGCC
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEECC
PGGTASNVITYMARGNIALSVACTSVSTLLAPLLTPAIFYLLASQWIQIDAMSMFVSILQ
CCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILFPILIGLLLRRFFARQVNRYIEVMPLISVFAIVAIVAAIIGASKAAILQSGALILAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHH
VMLHNGLGFLIGYWASRWLRLSDYDSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSA
HHHHCCHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHH
IFSLWHNISGAMLATYWARQSKQKTQQEPRDNF
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQIVKIKMERGRMMALLRFTAFVQKTFALWVVVFAALAFWMPDVFVWLKAYIPWMLGIIM
CCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGMGMTMSLQDFQGILRYPKAVLIGVVAQFVVMPGLAFLLCQLFQLPSEIAIGVILVGCC
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEECC
PGGTASNVITYMARGNIALSVACTSVSTLLAPLLTPAIFYLLASQWIQIDAMSMFVSILQ
CCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILFPILIGLLLRRFFARQVNRYIEVMPLISVFAIVAIVAAIIGASKAAILQSGALILAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHH
VMLHNGLGFLIGYWASRWLRLSDYDSKAIAIEVGMQNSGLGVALAAVHFAASPITAVPSA
HHHHCCHHHHHHHHHHHHEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHH
IFSLWHNISGAMLATYWARQSKQKTQQEPRDNF
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]