Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 50086466

GI number: 50086466

Start: 3436608

End: 3437333

Strand: Reverse

Name: yebA [H]

Synonym: ACIAD3508

Alternate gene names: 50086466

Gene position: 3437333-3436608 (Counterclockwise)

Preceding gene: 50086468

Following gene: 50086465

Centisome position: 95.52

GC content: 44.35

Gene sequence:

>726_bases
TTGAGTAAGAACAGTTTCAAGAGGTTTTTTATGCATCCGCGCCGTATTTTACTTGCTTTTTCGCTGGCAGCTTCTGCCGC
ATCAGTCGCTTTCGCTGATTATCAAACGATAGACCAAACCAGTGCAACACCATCAGACCGTCTTGAACAACTCTCTCGTA
CATTGAGTCAGGGTTCTTATTCACATCCAGATGATCTTGATTTACCTGCCAGTGCGAGAGTTTCAGTAACTTTACGCGAA
AAATCAATAGAGCTAAATAACCAGACCCTCGAGAAAAAGTATCCTGGTTCGTCTTCTCGTTATAACACGTCCAATAATAA
TAGCCCTTATTCATGGTTAGTCACCCATCCTTTGCCAGATATGGTTCGTGTATCATCTGAATTTGGTACGCGTACACTGT
TGGGTACGACGCGTCCTCATGAGGGAATTGATTTATCTGCGCCGAGTGGCACACCAATTTATGCCTCTGGTCCAGGTATT
GTCACCAAAGCAGGCTGGGGTACAGGTTATGGTCAATATGTTGAGATTAATCATGGAAATGGTTACCTGACACGTTATGC
ACATGCTTCACGAATTATGGTTCAAGTGGGTGATCGTGTGAGTGCGGGTGAACGCATTGCTAATGTTGGTTGTACAGGTC
GTTGTACAGGCCCACACTTGCATTTTGAAGTGGTGAAAGATGGTCAGCGTAAAAATCCAGGCTCTTATCTTGCGTTATTG
CCGTAA

Upstream 100 bases:

>100_bases
ACGTTTTTAGGTTCAGACATTGTCAATATCCAGTTTGAATGTGTCTTCATCTTATACGTGTATTTCAACGGATATCAAGG
AAGAGATCACACAAGGAACT

Downstream 100 bases:

>100_bases
TGAGTGCATGTCAGATTATTTTCTCCATGTCTCTCACCGATTCAGTTATTTTTACGGATGAATTAAGCCTAACATTGAAT
CTCAAATAGTTGTGTATAAA

Product: signal peptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSKNSFKRFFMHPRRILLAFSLAASAASVAFADYQTIDQTSATPSDRLEQLSRTLSQGSYSHPDDLDLPASARVSVTLRE
KSIELNNQTLEKKYPGSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGI
VTKAGWGTGYGQYVEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNPGSYLALL
P

Sequences:

>Translated_241_residues
MSKNSFKRFFMHPRRILLAFSLAASAASVAFADYQTIDQTSATPSDRLEQLSRTLSQGSYSHPDDLDLPASARVSVTLRE
KSIELNNQTLEKKYPGSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGI
VTKAGWGTGYGQYVEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNPGSYLALL
P
>Mature_240_residues
SKNSFKRFFMHPRRILLAFSLAASAASVAFADYQTIDQTSATPSDRLEQLSRTLSQGSYSHPDDLDLPASARVSVTLREK
SIELNNQTLEKKYPGSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGIV
TKAGWGTGYGQYVEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNPGSYLALLP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=120, Percent_Identity=44.1666666666667, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082174, Length=99, Percent_Identity=41.4141414141414, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082297, Length=97, Percent_Identity=38.1443298969072, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=38.3838383838384, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 26293; Mature: 26162

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNSFKRFFMHPRRILLAFSLAASAASVAFADYQTIDQTSATPSDRLEQLSRTLSQGSY
CCCCHHHHHHHCHHHHHHHHHHHHHHHHEEHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SHPDDLDLPASARVSVTLREKSIELNNQTLEKKYPGSSSRYNTSNNNSPYSWLVTHPLPD
CCCCCCCCCCCCEEEEEEEECEEECCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCHH
MVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGTGYGQYVEINHGN
HHHHHHHCCCEEEEECCCCCCCEEEECCCCCEEEECCCCEEEECCCCCCCCEEEEEECCC
GYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNPGSYLALL
CEEEEHHHHEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEC
P
C
>Mature Secondary Structure 
SKNSFKRFFMHPRRILLAFSLAASAASVAFADYQTIDQTSATPSDRLEQLSRTLSQGSY
CCCHHHHHHHCHHHHHHHHHHHHHHHHEEHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
SHPDDLDLPASARVSVTLREKSIELNNQTLEKKYPGSSSRYNTSNNNSPYSWLVTHPLPD
CCCCCCCCCCCCEEEEEEEECEEECCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCHH
MVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGTGYGQYVEINHGN
HHHHHHHCCCEEEEECCCCCCCEEEECCCCCEEEECCCCEEEECCCCCCCCEEEEEECCC
GYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNPGSYLALL
CEEEEHHHHEEEEEEECCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]