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The map label for this gene is lrpB [H]

Identifier: 50086433

GI number: 50086433

Start: 3397928

End: 3398335

Strand: Reverse

Name: lrpB [H]

Synonym: ACIAD3472

Alternate gene names: 50086433

Gene position: 3398335-3397928 (Counterclockwise)

Preceding gene: 50086435

Following gene: 50086430

Centisome position: 94.43

GC content: 39.22

Gene sequence:

>408_bases
GTGAAAAAAATGCAAGATTTAGACCCCATTGATTTAAAGATTCTGGCTTTATTAAAACAAGACTCTCGCTTAAGCCATAA
ACAGATTGGAGCGCTAGTGCATCGAACGGGACAGGCTGTCGGGGCACGGATTAGTCATTTGATTGAGCAGGGCGTGATTG
AGCGTTATACACTGGCTATTGCCTATCCGCAAAAGCAGTTTATTCAGCTTTTTTTAAATGAGCCGAGGTTTTCCGAAATT
GAAAATATCATTAACCATTTTGAACAAGTAGATGAGTTTTATAAAGTGATGGGGAATGCCTGCTATATGGTGGTGGCACA
TTTTTCACCTCAAGAATTAAACCTTTTTATCGAGCAGATTTCCAAGTGGTGTCGTTATTCAGTTGAGAGCGTGATCAAGA
AAATTTAA

Upstream 100 bases:

>100_bases
CATGAGATGATCTCAATTGTTTGGATGAGATTGAGCTTAAATGTAACCTATCATCTGAGCGATAGTTTGTTGAAATAAAA
CGCATCCTTTATTTTTCACA

Downstream 100 bases:

>100_bases
GCCTGATAATGTTAAAAAAGACCCCAAGCCGAGTCTTGGGGTTGAGTTATTCTTGTATCAAAAGGTTTTTCTAATTTTTA
TCAGAGGGTATTTAAGCCGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKKMQDLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAYPQKQFIQLFLNEPRFSEI
ENIINHFEQVDEFYKVMGNACYMVVAHFSPQELNLFIEQISKWCRYSVESVIKKI

Sequences:

>Translated_135_residues
MKKMQDLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAYPQKQFIQLFLNEPRFSEI
ENIINHFEQVDEFYKVMGNACYMVVAHFSPQELNLFIEQISKWCRYSVESVIKKI
>Mature_135_residues
MKKMQDLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAYPQKQFIQLFLNEPRFSEI
ENIINHFEQVDEFYKVMGNACYMVVAHFSPQELNLFIEQISKWCRYSVESVIKKI

Specific function: Negative regulation of glyA transcription and kinB- dependent sporulation [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 15735; Mature: 15735

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMQDLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAI
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMGNACYMVVAHFSPQELNLFIEQI
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHH
SKWCRYSVESVIKKI
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKMQDLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAI
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMGNACYMVVAHFSPQELNLFIEQI
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHH
SKWCRYSVESVIKKI
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11902725; 9384377 [H]