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The map label for this gene is agmR [H]

Identifier: 50086430

GI number: 50086430

Start: 3394940

End: 3395590

Strand: Reverse

Name: agmR [H]

Synonym: ACIAD3469

Alternate gene names: 50086430

Gene position: 3395590-3394940 (Counterclockwise)

Preceding gene: 50086433

Following gene: 50086427

Centisome position: 94.36

GC content: 43.78

Gene sequence:

>651_bases
ATGAATATATTAATCGTCGATGATCATCCGCTATTTCGTCATGCTTTGATTCAAGCTGTTCGATATAGTTTGCCGCAAGC
ACAAATTCATGAAACAGCAGCAGTGAATGAGTTGTATCAACGTTTGGAAAGCGGCGCAGAGCCAGATCTGGTGATGCTTG
ATTTGAATTTGCCTGGGGCGTCAGGTTTTTCTGCATTGGTTCATGTACGGGCTCAGTATCCATCTCTTCCCATTATTGTG
GTTTCAGCACATGAAGAGGTATCTGTGATCCAGCGTGCAATTGCGCATGGTGCGATGGGGTATATTCCAAAGTCTGCACA
TCCAAGTCATATTGGCGAGGCTATTCGTCATGTACTTGAGGGTGAAATCTGGTTACCTCCAAATTTACCCAATAACTTGA
GCTTTGATCCGCGTGCTTCCGATGAAACTGAGCTGGCAGAGCGTATCCAGTCTCTCACGCCGCAGCAATTTCGAGTATTG
ATGATGGTGGCAGAAGGTTTACTGAATAAACAAATCGCTTATGAACTTGATGTTTCTGAAGCAACGATCAAGGCACATGT
GACTGCTATTTTTAGAAAGCTGGGCGTGCAAAACCGTACTCAGGCAGTACTTGCGATTAGTGCATTAAATATTGAAGAAA
AGAAACTCTAA

Upstream 100 bases:

>100_bases
CCGACATTTTACTTAAAAATTGGGTAATATGAGCATATCCTTAACGCCATCAGTATGCGTAAAATCAGACATACTGTGCC
AGAGATCTCTCGTTTCGCTT

Downstream 100 bases:

>100_bases
CAGACATGAATAAGGTTTGATCAAGAAAAATAGGGAGCATGCTCCCTATTTTATACAGAGAAATCTCACTATTTAAGCCA
GACAATCTTGCTTAGAGGTG

Product: two-component response regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNILIVDDHPLFRHALIQAVRYSLPQAQIHETAAVNELYQRLESGAEPDLVMLDLNLPGASGFSALVHVRAQYPSLPIIV
VSAHEEVSVIQRAIAHGAMGYIPKSAHPSHIGEAIRHVLEGEIWLPPNLPNNLSFDPRASDETELAERIQSLTPQQFRVL
MMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAVLAISALNIEEKKL

Sequences:

>Translated_216_residues
MNILIVDDHPLFRHALIQAVRYSLPQAQIHETAAVNELYQRLESGAEPDLVMLDLNLPGASGFSALVHVRAQYPSLPIIV
VSAHEEVSVIQRAIAHGAMGYIPKSAHPSHIGEAIRHVLEGEIWLPPNLPNNLSFDPRASDETELAERIQSLTPQQFRVL
MMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAVLAISALNIEEKKL
>Mature_216_residues
MNILIVDDHPLFRHALIQAVRYSLPQAQIHETAAVNELYQRLESGAEPDLVMLDLNLPGASGFSALVHVRAQYPSLPIIV
VSAHEEVSVIQRAIAHGAMGYIPKSAHPSHIGEAIRHVLEGEIWLPPNLPNNLSFDPRASDETELAERIQSLTPQQFRVL
MMVAEGLLNKQIAYELDVSEATIKAHVTAIFRKLGVQNRTQAVLAISALNIEEKKL

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789937, Length=207, Percent_Identity=27.536231884058, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788521, Length=209, Percent_Identity=33.0143540669856, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787473, Length=208, Percent_Identity=34.6153846153846, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788222, Length=196, Percent_Identity=24.4897959183673, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786747, Length=199, Percent_Identity=26.1306532663317, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=29.4416243654822, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788546, Length=216, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790102, Length=205, Percent_Identity=24.8780487804878, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23879; Mature: 23879

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIVDDHPLFRHALIQAVRYSLPQAQIHETAAVNELYQRLESGAEPDLVMLDLNLPGA
CEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
SGFSALVHVRAQYPSLPIIVVSAHEEVSVIQRAIAHGAMGYIPKSAHPSHIGEAIRHVLE
CCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
GEIWLPPNLPNNLSFDPRASDETELAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSE
CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHEEEECCCH
ATIKAHVTAIFRKLGVQNRTQAVLAISALNIEEKKL
HHHHHHHHHHHHHHCCCCCHHHEEEHEECCCHHCCC
>Mature Secondary Structure
MNILIVDDHPLFRHALIQAVRYSLPQAQIHETAAVNELYQRLESGAEPDLVMLDLNLPGA
CEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
SGFSALVHVRAQYPSLPIIVVSAHEEVSVIQRAIAHGAMGYIPKSAHPSHIGEAIRHVLE
CCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
GEIWLPPNLPNNLSFDPRASDETELAERIQSLTPQQFRVLMMVAEGLLNKQIAYELDVSE
CCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHEEEECCCH
ATIKAHVTAIFRKLGVQNRTQAVLAISALNIEEKKL
HHHHHHHHHHHHHHCCCCCHHHEEEHEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]