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The map label for this gene is ydaM [H]

Identifier: 50086421

GI number: 50086421

Start: 3380833

End: 3382575

Strand: Reverse

Name: ydaM [H]

Synonym: ACIAD3457

Alternate gene names: 50086421

Gene position: 3382575-3380833 (Counterclockwise)

Preceding gene: 50086423

Following gene: 50086417

Centisome position: 94.0

GC content: 38.38

Gene sequence:

>1743_bases
GTGAATTCAAAAAGAAACAATGAGCTTGGTTATCCTGAAAGTGGCAAAACAGCATCAATAGAGACATCTATACGCTATCG
CTTATTTCTATTTCTTTTTATCTTAATTTTATCGTTTCTGATTATTTCTCTTCCGCAGGTATTTAGCAGTTATCAGCAGC
TACAACAAAGTCATCGTGGTTTTATTGAAATCAAATTATTAGAAACATTAACAGACACTGCAAATAAAATTTCTAGAGAA
CGTGCTTTTGCCAATCAATTGATGGCGAGTCCACCAGAACTGATGACACAGAAAAGACGTCAGTTAAATGAGTATCGATT
GCAGGTTGATGCATCATTGCAGCAAACGATTCGATTGCTGAATGATAATGAACAGCAGCAAGTGGCGCAGGTTGTAAGTG
TAGATATACAATCGCGTTTAGAAGTAGCACGCCATGTTGTTGACCAATATGTTAATCAACCATTGGCCCATAAATCTTAT
CAACAATATGATCATGCTATACGGGGCATGTTTTCGGCGTGGGATAGCTGTCGCGAAGCTTTAAAAAAATTATTAATTAG
TTCGAGTCAGGAAGATGACGGTTTATCTCGCAATATGACTTTAATTTTACTTGTCTCTGATCTGCGTGACCAATCTGGAC
GGGTTGTATCAAATATTATTGCGCCTGTGAGTTTTTCAATTCAGATTCCTGACGATAACCGTGCTCGTTCTTTACAGACT
CAACATCAGGCAATCTATTTGTGGAAATTGATTGATACACTGCAACCTGATCATACTCGAACTCCAGAATATCTACATTT
ATATCAACAAGTAAAAACACAGTTTTTAGATGAAGGCATTGAACTCGTTTCTACGCTATTACGTGAAAGTGACCAGCACC
GTGCCTATTCATTATCTGCGATCAGTTTGACCGAACAGATTGTGAGCAAGTTTAATTCAATTGTAGCGTTACAAAATTAT
CTGGTACAAACCAGCCTGGCCCAAGCTGAGCAACAAGAATATGCCGCATGGCAAAAGTTTATACTGACGGTACTCATTTC
GATTTTTTCTCTCTTAGTTGCAGGCCTAACTTTACGTTATATACAGCGTTATATTTTGCTTCCACTTATGGAGGCACGTG
AAAGTATTTTAGCCTTATCACTCCCTCAATCTTATGGTCAGGAAAATCGCAAGAAAAAACGCTTCAAAGGTGAATTTGCA
GAGTTGTTCGCTGCGATTGCCAAATTAAAAAGATTGTTATCTCAAAAAGATGCATTAGAGTTTCAACTGCGTAATATTGC
GCATACTGATACCTTGACAGGTGTGGCCAATCGTCAAGCACTTGAGGCATATTTCATAGCGCTTGAACAAGAACCATGGA
AGTGGTCAGATTTGTGTTTAATGATTATTGATATCGACTATTTTAAACAGATTAATGATCAATATGGTCACATGGTGGGG
GATCAGGTTATACAGCGTATTGCGGATCAGTTGCAGCAGCATGTCGATGTTTCCGATCTGATTGTACGCTATGGAGGAGA
TGAGTTTTTAATTCTGATTGAAGATATTGCTGCAGAGGATGCACTTCAACTTGCAGAAAAGATAAGTAAAAGTATTTATA
CACTATGTATTGCTCCCGATATTTCGACATCGGTAAGTATTGGGTTAGCAGTAGGTGCTAGAAATTGGCTCACCTTATTT
CAAAATGCAGATCAGGCATTGTTGCGAGCCAAAGCCAAAGGAAAAAATAGAGTGGAGGGATAA

Upstream 100 bases:

>100_bases
CGTATAGTTAATTTTTTTTATGCTGCACTATAAGTTATTGCTAAATAATAAAGATTTTAAGTTAAAATATCATGACAGAA
ACAGCCTATTCTAATTTTAA

Downstream 100 bases:

>100_bases
AGGAATATTCTCATTTAGAAATATATAATTTCTTGATGAGAGGCATTTATTTAAAATAAAATTTCACTTAATGAATTTTG
TGAAATAAACCATTTGCCAT

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MNSKRNNELGYPESGKTASIETSIRYRLFLFLFILILSFLIISLPQVFSSYQQLQQSHRGFIEIKLLETLTDTANKISRE
RAFANQLMASPPELMTQKRRQLNEYRLQVDASLQQTIRLLNDNEQQQVAQVVSVDIQSRLEVARHVVDQYVNQPLAHKSY
QQYDHAIRGMFSAWDSCREALKKLLISSSQEDDGLSRNMTLILLVSDLRDQSGRVVSNIIAPVSFSIQIPDDNRARSLQT
QHQAIYLWKLIDTLQPDHTRTPEYLHLYQQVKTQFLDEGIELVSTLLRESDQHRAYSLSAISLTEQIVSKFNSIVALQNY
LVQTSLAQAEQQEYAAWQKFILTVLISIFSLLVAGLTLRYIQRYILLPLMEARESILALSLPQSYGQENRKKKRFKGEFA
ELFAAIAKLKRLLSQKDALEFQLRNIAHTDTLTGVANRQALEAYFIALEQEPWKWSDLCLMIIDIDYFKQINDQYGHMVG
DQVIQRIADQLQQHVDVSDLIVRYGGDEFLILIEDIAAEDALQLAEKISKSIYTLCIAPDISTSVSIGLAVGARNWLTLF
QNADQALLRAKAKGKNRVEG

Sequences:

>Translated_580_residues
MNSKRNNELGYPESGKTASIETSIRYRLFLFLFILILSFLIISLPQVFSSYQQLQQSHRGFIEIKLLETLTDTANKISRE
RAFANQLMASPPELMTQKRRQLNEYRLQVDASLQQTIRLLNDNEQQQVAQVVSVDIQSRLEVARHVVDQYVNQPLAHKSY
QQYDHAIRGMFSAWDSCREALKKLLISSSQEDDGLSRNMTLILLVSDLRDQSGRVVSNIIAPVSFSIQIPDDNRARSLQT
QHQAIYLWKLIDTLQPDHTRTPEYLHLYQQVKTQFLDEGIELVSTLLRESDQHRAYSLSAISLTEQIVSKFNSIVALQNY
LVQTSLAQAEQQEYAAWQKFILTVLISIFSLLVAGLTLRYIQRYILLPLMEARESILALSLPQSYGQENRKKKRFKGEFA
ELFAAIAKLKRLLSQKDALEFQLRNIAHTDTLTGVANRQALEAYFIALEQEPWKWSDLCLMIIDIDYFKQINDQYGHMVG
DQVIQRIADQLQQHVDVSDLIVRYGGDEFLILIEDIAAEDALQLAEKISKSIYTLCIAPDISTSVSIGLAVGARNWLTLF
QNADQALLRAKAKGKNRVEG
>Mature_580_residues
MNSKRNNELGYPESGKTASIETSIRYRLFLFLFILILSFLIISLPQVFSSYQQLQQSHRGFIEIKLLETLTDTANKISRE
RAFANQLMASPPELMTQKRRQLNEYRLQVDASLQQTIRLLNDNEQQQVAQVVSVDIQSRLEVARHVVDQYVNQPLAHKSY
QQYDHAIRGMFSAWDSCREALKKLLISSSQEDDGLSRNMTLILLVSDLRDQSGRVVSNIIAPVSFSIQIPDDNRARSLQT
QHQAIYLWKLIDTLQPDHTRTPEYLHLYQQVKTQFLDEGIELVSTLLRESDQHRAYSLSAISLTEQIVSKFNSIVALQNY
LVQTSLAQAEQQEYAAWQKFILTVLISIFSLLVAGLTLRYIQRYILLPLMEARESILALSLPQSYGQENRKKKRFKGEFA
ELFAAIAKLKRLLSQKDALEFQLRNIAHTDTLTGVANRQALEAYFIALEQEPWKWSDLCLMIIDIDYFKQINDQYGHMVG
DQVIQRIADQLQQHVDVSDLIVRYGGDEFLILIEDIAAEDALQLAEKISKSIYTLCIAPDISTSVSIGLAVGARNWLTLF
QNADQALLRAKAKGKNRVEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=38.5057471264368, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=37.3493975903614, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=36.9426751592357, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=36.2068965517241, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=32.1428571428571, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=29.8913043478261, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=29.559748427673, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=29.2682926829268, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=241, Percent_Identity=26.5560165975104, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=131, Percent_Identity=36.6412213740458, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=30.8641975308642, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788381, Length=112, Percent_Identity=34.8214285714286, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 66346; Mature: 66346

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKRNNELGYPESGKTASIETSIRYRLFLFLFILILSFLIISLPQVFSSYQQLQQSHRG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FIEIKLLETLTDTANKISRERAFANQLMASPPELMTQKRRQLNEYRLQVDASLQQTIRLL
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NDNEQQQVAQVVSVDIQSRLEVARHVVDQYVNQPLAHKSYQQYDHAIRGMFSAWDSCREA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKLLISSSQEDDGLSRNMTLILLVSDLRDQSGRVVSNIIAPVSFSIQIPDDNRARSLQT
HHHHHHCCCCCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHCCCEEEEECCCCCCHHHHHH
QHQAIYLWKLIDTLQPDHTRTPEYLHLYQQVKTQFLDEGIELVSTLLRESDQHRAYSLSA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ISLTEQIVSKFNSIVALQNYLVQTSLAQAEQQEYAAWQKFILTVLISIFSLLVAGLTLRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQRYILLPLMEARESILALSLPQSYGQENRKKKRFKGEFAELFAAIAKLKRLLSQKDALE
HHHHHHHHHHHHHHHHHHEECCHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
FQLRNIAHTDTLTGVANRQALEAYFIALEQEPWKWSDLCLMIIDIDYFKQINDQYGHMVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHH
DQVIQRIADQLQQHVDVSDLIVRYGGDEFLILIEDIAAEDALQLAEKISKSIYTLCIAPD
HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHEEEEECCC
ISTSVSIGLAVGARNWLTLFQNADQALLRAKAKGKNRVEG
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNSKRNNELGYPESGKTASIETSIRYRLFLFLFILILSFLIISLPQVFSSYQQLQQSHRG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FIEIKLLETLTDTANKISRERAFANQLMASPPELMTQKRRQLNEYRLQVDASLQQTIRLL
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NDNEQQQVAQVVSVDIQSRLEVARHVVDQYVNQPLAHKSYQQYDHAIRGMFSAWDSCREA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKLLISSSQEDDGLSRNMTLILLVSDLRDQSGRVVSNIIAPVSFSIQIPDDNRARSLQT
HHHHHHCCCCCCCCCCCCCEEEEEEEHHCCCCCHHHHHHHCCCEEEEECCCCCCHHHHHH
QHQAIYLWKLIDTLQPDHTRTPEYLHLYQQVKTQFLDEGIELVSTLLRESDQHRAYSLSA
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ISLTEQIVSKFNSIVALQNYLVQTSLAQAEQQEYAAWQKFILTVLISIFSLLVAGLTLRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQRYILLPLMEARESILALSLPQSYGQENRKKKRFKGEFAELFAAIAKLKRLLSQKDALE
HHHHHHHHHHHHHHHHHHEECCHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
FQLRNIAHTDTLTGVANRQALEAYFIALEQEPWKWSDLCLMIIDIDYFKQINDQYGHMVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEHHHHHHHHHHHHHHHH
DQVIQRIADQLQQHVDVSDLIVRYGGDEFLILIEDIAAEDALQLAEKISKSIYTLCIAPD
HHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHEEEEECCC
ISTSVSIGLAVGARNWLTLFQNADQALLRAKAKGKNRVEG
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]