Click here to switch to the map view.

The map label for this gene is glpM [H]

Identifier: 50086417

GI number: 50086417

Start: 3375479

End: 3375823

Strand: Reverse

Name: glpM [H]

Synonym: ACIAD3453

Alternate gene names: 50086417

Gene position: 3375823-3375479 (Counterclockwise)

Preceding gene: 50086421

Following gene: 50086415

Centisome position: 93.81

GC content: 43.77

Gene sequence:

>345_bases
TTGATGTTCGGGCTGTTTTTAAAATGCACGCTTGGGGCGGCAGTTGTGCTCTTGATTTCAATTTTGTCCAAGAGCAAAAC
ATTTTATATTGCGGGGCTGGTACCATTATTTCCAACATTTGCCCTGATTGCTCACGTCATTGTATTTGGGCAACAAGGCG
CCGAAGCATTGCGTAAAACGGCTTTATTCGGCCTCTGGTCACTTATTCCTTATGCGGTGTACTTGGGTATGGTGTATTAC
TTTGCCAACCGTTTACCGATTGGACTGTGCTTGACTGTTGCAACGCTAACGTGGGTGATAGTTGCGGCAGGTTTGATCTA
TGGTTGGAATAGTTATTTTAATTAA

Upstream 100 bases:

>100_bases
TGCAAGCTGAATTAAAGAATAGATTGATTGTTGACAACGAGCTTCATTTCTTTTTTAAAAAAGGGTAAGGTGCTTCAATC
TTAAAATTTACAGGTCAGTC

Downstream 100 bases:

>100_bases
TCTCAGACCCTTATGTTTTTCATCATGAAGTGAGTACACACACCGCGCTTTAATCTTGCCCATAACAGCAGATTCAGTGT
GTGACTCACTGTCGATACAT

Product: membrane protein required for efficient alginate biosynthesis

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MMFGLFLKCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKTALFGLWSLIPYAVYLGMVYY
FANRLPIGLCLTVATLTWVIVAAGLIYGWNSYFN

Sequences:

>Translated_114_residues
MMFGLFLKCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKTALFGLWSLIPYAVYLGMVYY
FANRLPIGLCLTVATLTWVIVAAGLIYGWNSYFN
>Mature_114_residues
MMFGLFLKCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKTALFGLWSLIPYAVYLGMVYY
FANRLPIGLCLTVATLTWVIVAAGLIYGWNSYFN

Specific function: Unknown

COG id: COG3136

COG function: function code R; Uncharacterized membrane protein required for alginate biosynthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To P.aeruginosa glpM [H]

Homologues:

Organism=Escherichia coli, GI1787892, Length=108, Percent_Identity=55.5555555555556, Blast_Score=102, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009707
- ProDom:   PD028709 [H]

Pfam domain/function: PF06942 GlpM [H]

EC number: NA

Molecular weight: Translated: 12519; Mature: 12519

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFGLFLKCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKT
CCHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ALFGLWSLIPYAVYLGMVYYFANRLPIGLCLTVATLTWVIVAAGLIYGWNSYFN
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMFGLFLKCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKT
CCHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ALFGLWSLIPYAVYLGMVYYFANRLPIGLCLTVATLTWVIVAAGLIYGWNSYFN
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]