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The map label for this gene is 50086376

Identifier: 50086376

GI number: 50086376

Start: 3318989

End: 3319615

Strand: Reverse

Name: 50086376

Synonym: ACIAD3402

Alternate gene names: NA

Gene position: 3319615-3318989 (Counterclockwise)

Preceding gene: 50086377

Following gene: 50086375

Centisome position: 92.25

GC content: 43.7

Gene sequence:

>627_bases
ATGCGAGATCAGGGACGTTTGGTCGAGTGGTTTGATGACAAGGGCTATGGCTTTATTCAGCCCAATGATTCTCAAAAGGG
CCGTGTATTTCTGCATATCCGTGATTTTGCACGTAAGGGGCCGCGTCCGATTGTTGGCTGTGCGCTTGAATATCTTGTGA
TTCTGGATGAACAAGGACGGCATCGGGCCATTCAGGTGGTGTATTTAAAAGCCCAGCAAGCACGCCCGACTCAACCCAAA
AACAATGTAAATAAACCTAATCAGCCGAGTACATTGGCACCGATGCAAATTGCGTGTGTGCTTTATATTTTAGCGATTGC
TGTATTGAGTTGGATGCATGTTTTGCCTAGCTATAGCTTTATTTTTATTGCTCTGATGAATGCACTCAGCTATTGGCTCT
ATGCCCAAGATAAAGAAGCGGCGCAACTGGGAAATCGGCGCGTGCCTGAGCAAAGCTTGCACATTGTTGCATTTTTGGGA
GGTTGGCCAGCGGCTTGGCTGGCGCAACAGAAATTGCGACATAAAACACAAAAACAACCCTTTAGAAAGATTTATTTCTG
TACCATAGTTTTAAACATACTTTTATTGTTGTGGTTCATTTCTCCTTTAAATGTCATATTGCATTAA

Upstream 100 bases:

>100_bases
AGGCCGTATAGGTGATGATATTATGCAGAAAAATCCACTCGAAATGCGCAATATGCTGGTAGACCGTTTACAGGCAATGG
CGAAATAAGGATATACGGAT

Downstream 100 bases:

>100_bases
AGGGAGCATGAAATAGAAAAATCAAAAAGGTGTCCTTATGAATCTTCCTTCAGAACAAATTCAATCCAATAAAACTTTAA
CGCTGGTCTTATATATTCTT

Product: cold shock protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MRDQGRLVEWFDDKGYGFIQPNDSQKGRVFLHIRDFARKGPRPIVGCALEYLVILDEQGRHRAIQVVYLKAQQARPTQPK
NNVNKPNQPSTLAPMQIACVLYILAIAVLSWMHVLPSYSFIFIALMNALSYWLYAQDKEAAQLGNRRVPEQSLHIVAFLG
GWPAAWLAQQKLRHKTQKQPFRKIYFCTIVLNILLLLWFISPLNVILH

Sequences:

>Translated_208_residues
MRDQGRLVEWFDDKGYGFIQPNDSQKGRVFLHIRDFARKGPRPIVGCALEYLVILDEQGRHRAIQVVYLKAQQARPTQPK
NNVNKPNQPSTLAPMQIACVLYILAIAVLSWMHVLPSYSFIFIALMNALSYWLYAQDKEAAQLGNRRVPEQSLHIVAFLG
GWPAAWLAQQKLRHKTQKQPFRKIYFCTIVLNILLLLWFISPLNVILH
>Mature_208_residues
MRDQGRLVEWFDDKGYGFIQPNDSQKGRVFLHIRDFARKGPRPIVGCALEYLVILDEQGRHRAIQVVYLKAQQARPTQPK
NNVNKPNQPSTLAPMQIACVLYILAIAVLSWMHVLPSYSFIFIALMNALSYWLYAQDKEAAQLGNRRVPEQSLHIVAFLG
GWPAAWLAQQKLRHKTQKQPFRKIYFCTIVLNILLLLWFISPLNVILH

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24021; Mature: 24021

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDQGRLVEWFDDKGYGFIQPNDSQKGRVFLHIRDFARKGPRPIVGCALEYLVILDEQGR
CCCCCCEEEEECCCCEEEECCCCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHEECCCCC
HRAIQVVYLKAQQARPTQPKNNVNKPNQPSTLAPMQIACVLYILAIAVLSWMHVLPSYSF
CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
IFIALMNALSYWLYAQDKEAAQLGNRRVPEQSLHIVAFLGGWPAAWLAQQKLRHKTQKQP
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCH
FRKIYFCTIVLNILLLLWFISPLNVILH
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRDQGRLVEWFDDKGYGFIQPNDSQKGRVFLHIRDFARKGPRPIVGCALEYLVILDEQGR
CCCCCCEEEEECCCCEEEECCCCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHEECCCCC
HRAIQVVYLKAQQARPTQPKNNVNKPNQPSTLAPMQIACVLYILAIAVLSWMHVLPSYSF
CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
IFIALMNALSYWLYAQDKEAAQLGNRRVPEQSLHIVAFLGGWPAAWLAQQKLRHKTQKQP
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCH
FRKIYFCTIVLNILLLLWFISPLNVILH
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA