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The map label for this gene is radC [C]

Identifier: 50086129

GI number: 50086129

Start: 3053102

End: 3053917

Strand: Direct

Name: radC [C]

Synonym: ACIAD3126

Alternate gene names: 50086129

Gene position: 3053102-3053917 (Clockwise)

Preceding gene: 50086126

Following gene: 50086130

Centisome position: 84.84

GC content: 38.36

Gene sequence:

>816_bases
TTGTCATTTTCAAATCAAAACTACAACGTACATACTTTTATCATAATGAATCAATCTATTAAATTTTGGCCTGAACAAGA
ACGGCCCAGAGAACGCTTATTACATTCGGGGCCTGAGAGTCTATCTGATGCAGAGTTACTTGCGATTTTCTTGAGAACAG
GCTCTAAACAACACTCTGCTGTTGAACTGGCCCGTTTGATGATTCAACACTTTGGCGGTTTAAATCCAGTCTTTGATGCA
TCGCTGCAAGAACTGTCGCATTTTCATGGTATTGGAACCACTAAATATGCGCATCTTATGGCTGTTAAAGAATTAGGACG
GCGCTATCTAAATCACTATTTTCATCAAGATGCCTTGAATCTTAATTCTTCCAGATTGGTACTTGATTATTTACGCTACG
AGTTACTCGGAGAAAAGCAGGAAGTATTTGCAGTATTATGCCTCGATAGCGAACTTAGAAAATTAAACTTTAAAAAACTA
TTTTATGGTTCTTTAAATGCCTGCAATATTTCAATTAATCATACCTTACGTTATGCCTTGCAACAGCATGCCTGTCATAT
TGTCATTGCGCACAATCATCCTTTTGGAAAAGCAGAACCATCAGCTGCCGACCTTGATTTGACGCATCAGCTTTATCAGG
CTTGCCAGCTCGTCGAAATCAAGCTACTGGACCATTTTATTATTGCAAAAGATGGGACATTTTCATTTGCAGAACGTGCT
TTACTCAGCCAAAAAAAATGCATGCATACAGATATTGACAAACCTGACTTGACTGGTGAAGATCATCACAAAAAAAGCTG
TGATAGATCACCATGA

Upstream 100 bases:

>100_bases
TTTTTATTTGGAATGACACTTAAATCAAAGCTCACGAACAGTTTACCTTTCTGTTGCAGTGGCGCTCACAATAGCATTAA
ATATGAATTGACCCAAGTGA

Downstream 100 bases:

>100_bases
TTGTCCGTGACCAAACTGATATTTTTAAATTGCTGTTTTCTTGGCGCGGCACGATTTTACCTAAAATTTTGCCACCACTT
GGGGTCATTATGTTGATCTC

Product: DNA repair protein, associated with replication forks

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSFSNQNYNVHTFIIMNQSIKFWPEQERPRERLLHSGPESLSDAELLAIFLRTGSKQHSAVELARLMIQHFGGLNPVFDA
SLQELSHFHGIGTTKYAHLMAVKELGRRYLNHYFHQDALNLNSSRLVLDYLRYELLGEKQEVFAVLCLDSELRKLNFKKL
FYGSLNACNISINHTLRYALQQHACHIVIAHNHPFGKAEPSAADLDLTHQLYQACQLVEIKLLDHFIIAKDGTFSFAERA
LLSQKKCMHTDIDKPDLTGEDHHKKSCDRSP

Sequences:

>Translated_271_residues
MSFSNQNYNVHTFIIMNQSIKFWPEQERPRERLLHSGPESLSDAELLAIFLRTGSKQHSAVELARLMIQHFGGLNPVFDA
SLQELSHFHGIGTTKYAHLMAVKELGRRYLNHYFHQDALNLNSSRLVLDYLRYELLGEKQEVFAVLCLDSELRKLNFKKL
FYGSLNACNISINHTLRYALQQHACHIVIAHNHPFGKAEPSAADLDLTHQLYQACQLVEIKLLDHFIIAKDGTFSFAERA
LLSQKKCMHTDIDKPDLTGEDHHKKSCDRSP
>Mature_270_residues
SFSNQNYNVHTFIIMNQSIKFWPEQERPRERLLHSGPESLSDAELLAIFLRTGSKQHSAVELARLMIQHFGGLNPVFDAS
LQELSHFHGIGTTKYAHLMAVKELGRRYLNHYFHQDALNLNSSRLVLDYLRYELLGEKQEVFAVLCLDSELRKLNFKKLF
YGSLNACNISINHTLRYALQQHACHIVIAHNHPFGKAEPSAADLDLTHQLYQACQLVEIKLLDHFIIAKDGTFSFAERAL
LSQKKCMHTDIDKPDLTGEDHHKKSCDRSP

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=214, Percent_Identity=37.8504672897196, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI2367100, Length=135, Percent_Identity=34.8148148148148, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788312, Length=135, Percent_Identity=34.0740740740741, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788997, Length=133, Percent_Identity=32.3308270676692, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3126_ACIAD (Q6F7Z8)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_047639.1
- ProteinModelPortal:   Q6F7Z8
- SMR:   Q6F7Z8
- STRING:   Q6F7Z8
- GeneID:   2879472
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD3126
- NMPDR:   fig|62977.3.peg.2832
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- PhylomeDB:   Q6F7Z8
- ProtClustDB:   CLSK707775
- BioCyc:   ASP62977:ACIAD3126-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 31108; Mature: 30977

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSNQNYNVHTFIIMNQSIKFWPEQERPRERLLHSGPESLSDAELLAIFLRTGSKQHSA
CCCCCCCCEEEEEEEECCCEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHH
VELARLMIQHFGGLNPVFDASLQELSHFHGIGTTKYAHLMAVKELGRRYLNHYFHQDALN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LNSSRLVLDYLRYELLGEKQEVFAVLCLDSELRKLNFKKLFYGSLNACNISINHTLRYAL
CCCCHHHHHHHHHHHHCCHHHEEEEEEECHHHHHCCHHHHHCCCCCEEEEEHHHHHHHHH
QQHACHIVIAHNHPFGKAEPSAADLDLTHQLYQACQLVEIKLLDHFIIAKDGTFSFAERA
HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHH
LLSQKKCMHTDIDKPDLTGEDHHKKSCDRSP
HHHHHHHHHCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure 
SFSNQNYNVHTFIIMNQSIKFWPEQERPRERLLHSGPESLSDAELLAIFLRTGSKQHSA
CCCCCCCEEEEEEEECCCEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHH
VELARLMIQHFGGLNPVFDASLQELSHFHGIGTTKYAHLMAVKELGRRYLNHYFHQDALN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
LNSSRLVLDYLRYELLGEKQEVFAVLCLDSELRKLNFKKLFYGSLNACNISINHTLRYAL
CCCCHHHHHHHHHHHHCCHHHEEEEEEECHHHHHCCHHHHHCCCCCEEEEEHHHHHHHHH
QQHACHIVIAHNHPFGKAEPSAADLDLTHQLYQACQLVEIKLLDHFIIAKDGTFSFAERA
HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHH
LLSQKKCMHTDIDKPDLTGEDHHKKSCDRSP
HHHHHHHHHCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA