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The map label for this gene is xylS1 [H]

Identifier: 50085745

GI number: 50085745

Start: 2633143

End: 2634144

Strand: Reverse

Name: xylS1 [H]

Synonym: ACIAD2678

Alternate gene names: 50085745

Gene position: 2634144-2633143 (Counterclockwise)

Preceding gene: 50085746

Following gene: 50085744

Centisome position: 73.2

GC content: 35.93

Gene sequence:

>1002_bases
ATGTTATCACTCAGCCAAGAGATGGATTTGAATCATTATTCGAGTCAGGCAGATTTTGCACATCATCTAATGTCTAGCAT
TTGTGGTGAACATCGGCTTGAAACAAGCTGCCGAGACAAATTAGATTTTCATTATGAAGGTATTCGTCTGCCACATAAGC
GTTTGGCCATGGGCAAAATTAGCTATGGCGCCCATGTATGTATCAATACCTCCAACTTACGTGCTTATAGCATTAGTCTG
CCAGTTCAAGGCAAACAGGTTCTAAATGTGCGCGGCGCTGAATATATTTCTAACTGTGACAAAGGATTAATCCTCTCAAA
TAATGAATTACAAGACTTGGTTATTGATAAAGATTGTATTAAATATCAGGTTGTGATTCCTGAACATAGTATGCAACAAG
TACTTGGTGAGCTTTTACATCAGCCGCTTGATTATCCCGTTCTTTTTAATCCAGAAATGAATTTGAATGTGGATAGTTCG
CTCTTTGTCTGGTGGAAAAATATTGACAATTTTTTGAACTTGCGTGCCCAATTTAAGGGCGTACAGGGAATGCAGCTCTG
GTCTGAAGATTATGAAAATTTTTTGATTAAAGCTTTACTACTGTCACAAGAGAATAATTATTCTGGCATGCTTCGTGCCT
TATGCAATCAATATGAGCCAGAATATCTGCGTAAAATATGTGAATTTATCCGGCAACATGCGCATGAAAATATTTGTGCA
GATGATTTACATCGTATCGCTGGCGTCTCGAAAACTAAATTATACCAAGAATTTCAACATTATTATGGAACCAGTCCTTT
AGCGTTCTTACGTAAATATCGTTTGCAACAAATATATAAAATTCTAAAGAGTTCATCCAATAAAAAATTATCAATTTCTA
AATTGGCTTATGACTGGGGCTTTAATCATTTAGGACGCTTTTCTCAAGAGTATCGTGATGAGTTTGGAGAAACTCCAACT
GAAACTAAACATAAAATCAAATGGGAAAATACTAACAATTAA

Upstream 100 bases:

>100_bases
GGACATTGAGGTTAAGGAAAACCGTTGGGCTTTTACATGTGTAATTCTATGGCATATGAATTGCTTGAAAACAATTAAAG
TATAGCTAGGTGAAAAAGGT

Downstream 100 bases:

>100_bases
GCTCAATTGTTAAGTGCTAAAACCAGCCGTCGTTAGAATCTAAAAATAGTTAAAGCTTTTTAGCCAGAAATCTCTATTCT
TTGAGCCCATATTATCATCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MLSLSQEMDLNHYSSQADFAHHLMSSICGEHRLETSCRDKLDFHYEGIRLPHKRLAMGKISYGAHVCINTSNLRAYSISL
PVQGKQVLNVRGAEYISNCDKGLILSNNELQDLVIDKDCIKYQVVIPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDSS
LFVWWKNIDNFLNLRAQFKGVQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICA
DDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRFSQEYRDEFGETPT
ETKHKIKWENTNN

Sequences:

>Translated_333_residues
MLSLSQEMDLNHYSSQADFAHHLMSSICGEHRLETSCRDKLDFHYEGIRLPHKRLAMGKISYGAHVCINTSNLRAYSISL
PVQGKQVLNVRGAEYISNCDKGLILSNNELQDLVIDKDCIKYQVVIPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDSS
LFVWWKNIDNFLNLRAQFKGVQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICA
DDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRFSQEYRDEFGETPT
ETKHKIKWENTNN
>Mature_333_residues
MLSLSQEMDLNHYSSQADFAHHLMSSICGEHRLETSCRDKLDFHYEGIRLPHKRLAMGKISYGAHVCINTSNLRAYSISL
PVQGKQVLNVRGAEYISNCDKGLILSNNELQDLVIDKDCIKYQVVIPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDSS
LFVWWKNIDNFLNLRAQFKGVQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICA
DDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRFSQEYRDEFGETPT
ETKHKIKWENTNN

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38897; Mature: 38897

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLSQEMDLNHYSSQADFAHHLMSSICGEHRLETSCRDKLDFHYEGIRLPHKRLAMGKI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC
SYGAHVCINTSNLRAYSISLPVQGKQVLNVRGAEYISNCDKGLILSNNELQDLVIDKDCI
CCCCEEEEECCCCEEEEEECCCCCHHHHCCCCHHHHHCCCCCEEECCCCHHHHHCCCCCE
KYQVVIPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDSSLFVWWKNIDNFLNLRAQFKG
EEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC
VQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICA
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH
DDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWG
HHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHC
FNHLGRFSQEYRDEFGETPTETKHKIKWENTNN
HHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MLSLSQEMDLNHYSSQADFAHHLMSSICGEHRLETSCRDKLDFHYEGIRLPHKRLAMGKI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC
SYGAHVCINTSNLRAYSISLPVQGKQVLNVRGAEYISNCDKGLILSNNELQDLVIDKDCI
CCCCEEEEECCCCEEEEEECCCCCHHHHCCCCHHHHHCCCCCEEECCCCHHHHHCCCCCE
KYQVVIPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDSSLFVWWKNIDNFLNLRAQFKG
EEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHCC
VQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICA
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCH
DDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWG
HHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHC
FNHLGRFSQEYRDEFGETPTETKHKIKWENTNN
HHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]