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The map label for this gene is 50085697

Identifier: 50085697

GI number: 50085697

Start: 2579657

End: 2580295

Strand: Direct

Name: 50085697

Synonym: ACIAD2627

Alternate gene names: NA

Gene position: 2579657-2580295 (Clockwise)

Preceding gene: 50085696

Following gene: 50085698

Centisome position: 71.68

GC content: 41.63

Gene sequence:

>639_bases
ATGACAGGATTTTCCATCTCTATGGATTTAGCACCCAAACAGTCTCGATCTGACCGTAGTACTCATGAAGGTACGGTCGA
ACAACGTCTTAAGTTTTTTATGCAAGATGTGACTGGTCGTGCGCTAGTGATGATGGAAAGTGCAACTCAGGGACAACATG
GGATTGCGATGGACCTTGTTCAGGAAGCCTTTATTGCATTACATAAGTCGTATGCAGATAAAGCAACCGATGAATGGTAT
CCACTGTTTTACACCATACTCAATAACAAGCTCCAAGACTGGCGTCGTAAAGAAGCCAGACGTTCCAATCCATTTTCCTT
CTTTAAAAAAGTGAGTTTAGATTCTGATGAGGAAGTAACCGATGTTGTAGATGAAACGACACCAAATCCTTTCGAATTTT
TAGATCAAGCCGTAACAATTGAAGAAATTCAAGCAGCGATTGCTCAATTACCTGTAAGACAACAACAAGCATTTATGCTG
CGCGCATGGGAAGGTTTTGATACCCAAACGACTGCACAAATCATGAACTGTAGCGAAGGCAGTGTTAAAACTCACTATCA
TCGTGCGATTCAAGGATTACGTGCCTCATTAGCCCACTTAAATCCATCTTTGGGAGGTTCATCAGATGAATCAAGATGA

Upstream 100 bases:

>100_bases
TCATTTAAACTATCAAAAAATAACTGTTTATGTTGTCAACCCATTCTTCATTTTCAGCGTTATATTGAATATGTAATCTG
AAAGGAAGATTGGGTATCCA

Downstream 100 bases:

>100_bases
TTTCACAAAGCATGTGACGTCTAAGCTTGATGGACTAGCACGTCACCATAAAGACAAAGCCGTTGTCATGACACATGTTC
TTGAGAAAATAAAAGAAGAA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; Sigma-; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIALHKSYADKATDEWY
PLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFML
RAWEGFDTQTTAQIMNCSEGSVKTHYHRAIQGLRASLAHLNPSLGGSSDESR

Sequences:

>Translated_212_residues
MTGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIALHKSYADKATDEWY
PLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFML
RAWEGFDTQTTAQIMNCSEGSVKTHYHRAIQGLRASLAHLNPSLGGSSDESR
>Mature_211_residues
TGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIALHKSYADKATDEWYP
LFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLR
AWEGFDTQTTAQIMNCSEGSVKTHYHRAIQGLRASLAHLNPSLGGSSDESR

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24042; Mature: 23911

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLV
CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHH
QEAFIALHKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVT
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHH
DVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEG
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC
SVKTHYHRAIQGLRASLAHLNPSLGGSSDESR
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLV
CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHH
QEAFIALHKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVT
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHH
DVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEG
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC
SVKTHYHRAIQGLRASLAHLNPSLGGSSDESR
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA