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The map label for this gene is ydaM [C]

Identifier: 50085647

GI number: 50085647

Start: 2531243

End: 2532688

Strand: Direct

Name: ydaM [C]

Synonym: ACIAD2572

Alternate gene names: 50085647

Gene position: 2531243-2532688 (Clockwise)

Preceding gene: 50085646

Following gene: 50085649

Centisome position: 70.34

GC content: 39.42

Gene sequence:

>1446_bases
ATGCTTAAAGATATAAACTCAATGCAAAATTTGGATGCCTCTATTTTTGATCTTGCTCCTATCCCTATGTGGCTTGAGGA
TTATAGCCAGATCAAAATCCAGTTTGATCTATGGCGATCACAAGGTGTTGTAGATTTAAAGGCTTTTTTAAGTGAAGATT
TGGAACGGGTAAGATCATGCGCCCATAAAATTAAAGTAATAAAAATCAATCAAAAAACGCTTGATCTGTTTGAAGCATCT
TCTCAGCAAGAACTATGTTCACAGCTTCATCAGATTTTTCAGCAAGATATGCTACACTCGCATTTATATGAACTGGTCGA
TTTATGGGATGGAAAAACTCAATTTTCGAGTCAGGCGGTCAATTATACCCTTTCAGGAAAACGGCTGGACATTCAATTAC
ATGGTCAGATTTTACCAGGCTATGAAAATTGTCTCTCAAGGGTTTTACTCACCACAGAAGATGTGACCAACTATCAAAAT
GCGCTTCGACTTGAAGAAAAAAATCGGCGTTTGGCAGAATCACGCTTTAACTACTCGCCTACATCGCTTTGGGTCGAAGA
TTTTACTCGGGTAAAAATGCGTCTTGATCAGTTACGTGATATTGGTATTGATGATTTCAGAACCTTTCTGGACGTTCATC
CAGAATTTGTCAACCAATGCGTCGAAGATATTCTTATTCTGGATGTCAATCAGGCCACGCTTGATCTCTTTCAAGCACCA
GATAAAGCCACACTACTTAAAAACACTCACAAGATCTTCGCCAAGGAAATGGCATCAACATTTAGAGAACAATTAATAGA
ACTATGGAAAGGTAATATCCATCATCAGCGTGAAGCCATCAATTATGCACTCGATGGAAGTATCCGTAATGTTTTACTTC
AATTTACCGTCTTTCCAGGTTATGAACACAACTGGAGTGTGGTGCAGGTGGCGCTTACAGATATTACAGCGCGCAAGAAA
GCTGAAAATTATCTGGAATATCTTGGCAAACATGATGTGCTGACCAAACTACACAACCGTTCTTTCTACACAGAAGAGAT
TAACCGCCTGGAACGAAGTATTGTACGTCCTGTTTCGTGTATCTTTTTGGATATGAATGGGCTAAAAGACGTCAATGATC
ATCTTGGGCATGATGCAGGCGATGATTTATTGCGCCGTGTTGGTCATATCTTGACTCAAGCCATTCAGCAAACCTCTTAT
ACCGCTTCACGTATTGGGGGAGATGAATTTGTGATTCTCATGCCTGGTACCGAAGAAACTGCAGTAATGCAGATCTTACA
AACCATTTATGAGTTGCTTAATATCGATAACCAATTTTACTCAAGCCAACCCATTAGTATTGCAATTGGATATGCGACCA
CTCAGCACAACGAAAGTATAGAAGATATGCTAAAGCGTGCCGATCAAGACATGTATAAAAAGAAAAGGGACTATCATATC
CAGTAA

Upstream 100 bases:

>100_bases
AGAATAGTGTTGTAATTTATTACACAATATTATTCTTAGTCACTAATCTTCATCTGGCTATTTTAAAGCCAAAAGCTTCA
CTTTATACTGCCTAGCATTC

Downstream 100 bases:

>100_bases
ACCAATATGCTATAGCATTTGCCTTAAAAACAAATGTTGTAGCACACTATAAACAAACGATTATTCTTAACCTGCTTTAA
AACATCGATTTGATTTGGAT

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MLKDINSMQNLDASIFDLAPIPMWLEDYSQIKIQFDLWRSQGVVDLKAFLSEDLERVRSCAHKIKVIKINQKTLDLFEAS
SQQELCSQLHQIFQQDMLHSHLYELVDLWDGKTQFSSQAVNYTLSGKRLDIQLHGQILPGYENCLSRVLLTTEDVTNYQN
ALRLEEKNRRLAESRFNYSPTSLWVEDFTRVKMRLDQLRDIGIDDFRTFLDVHPEFVNQCVEDILILDVNQATLDLFQAP
DKATLLKNTHKIFAKEMASTFREQLIELWKGNIHHQREAINYALDGSIRNVLLQFTVFPGYEHNWSVVQVALTDITARKK
AENYLEYLGKHDVLTKLHNRSFYTEEINRLERSIVRPVSCIFLDMNGLKDVNDHLGHDAGDDLLRRVGHILTQAIQQTSY
TASRIGGDEFVILMPGTEETAVMQILQTIYELLNIDNQFYSSQPISIAIGYATTQHNESIEDMLKRADQDMYKKKRDYHI
Q

Sequences:

>Translated_481_residues
MLKDINSMQNLDASIFDLAPIPMWLEDYSQIKIQFDLWRSQGVVDLKAFLSEDLERVRSCAHKIKVIKINQKTLDLFEAS
SQQELCSQLHQIFQQDMLHSHLYELVDLWDGKTQFSSQAVNYTLSGKRLDIQLHGQILPGYENCLSRVLLTTEDVTNYQN
ALRLEEKNRRLAESRFNYSPTSLWVEDFTRVKMRLDQLRDIGIDDFRTFLDVHPEFVNQCVEDILILDVNQATLDLFQAP
DKATLLKNTHKIFAKEMASTFREQLIELWKGNIHHQREAINYALDGSIRNVLLQFTVFPGYEHNWSVVQVALTDITARKK
AENYLEYLGKHDVLTKLHNRSFYTEEINRLERSIVRPVSCIFLDMNGLKDVNDHLGHDAGDDLLRRVGHILTQAIQQTSY
TASRIGGDEFVILMPGTEETAVMQILQTIYELLNIDNQFYSSQPISIAIGYATTQHNESIEDMLKRADQDMYKKKRDYHI
Q
>Mature_481_residues
MLKDINSMQNLDASIFDLAPIPMWLEDYSQIKIQFDLWRSQGVVDLKAFLSEDLERVRSCAHKIKVIKINQKTLDLFEAS
SQQELCSQLHQIFQQDMLHSHLYELVDLWDGKTQFSSQAVNYTLSGKRLDIQLHGQILPGYENCLSRVLLTTEDVTNYQN
ALRLEEKNRRLAESRFNYSPTSLWVEDFTRVKMRLDQLRDIGIDDFRTFLDVHPEFVNQCVEDILILDVNQATLDLFQAP
DKATLLKNTHKIFAKEMASTFREQLIELWKGNIHHQREAINYALDGSIRNVLLQFTVFPGYEHNWSVVQVALTDITARKK
AENYLEYLGKHDVLTKLHNRSFYTEEINRLERSIVRPVSCIFLDMNGLKDVNDHLGHDAGDDLLRRVGHILTQAIQQTSY
TASRIGGDEFVILMPGTEETAVMQILQTIYELLNIDNQFYSSQPISIAIGYATTQHNESIEDMLKRADQDMYKKKRDYHI
Q

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=258, Percent_Identity=28.6821705426357, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787541, Length=256, Percent_Identity=25.390625, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=150, Percent_Identity=32.6666666666667, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI145693134, Length=152, Percent_Identity=30.2631578947368, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87082007, Length=181, Percent_Identity=24.8618784530387, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=149, Percent_Identity=29.5302013422819, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788381, Length=109, Percent_Identity=33.0275229357798, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=154, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 55894; Mature: 55894

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDINSMQNLDASIFDLAPIPMWLEDYSQIKIQFDLWRSQGVVDLKAFLSEDLERVRSC
CCCCCCHHHHCCCHHHHCCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
AHKIKVIKINQKTLDLFEASSQQELCSQLHQIFQQDMLHSHLYELVDLWDGKTQFSSQAV
HHCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHE
NYTLSGKRLDIQLHGQILPGYENCLSRVLLTTEDVTNYQNALRLEEKNRRLAESRFNYSP
EEEECCCEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TSLWVEDFTRVKMRLDQLRDIGIDDFRTFLDVHPEFVNQCVEDILILDVNQATLDLFQAP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHEECCCHHHHHHHHCC
DKATLLKNTHKIFAKEMASTFREQLIELWKGNIHHQREAINYALDGSIRNVLLQFTVFPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHEECCC
YEHNWSVVQVALTDITARKKAENYLEYLGKHDVLTKLHNRSFYTEEINRLERSIVRPVSC
CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCHHHE
IFLDMNGLKDVNDHLGHDAGDDLLRRVGHILTQAIQQTSYTASRIGGDEFVILMPGTEET
EEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
AVMQILQTIYELLNIDNQFYSSQPISIAIGYATTQHNESIEDMLKRADQDMYKKKRDYHI
HHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q
C
>Mature Secondary Structure
MLKDINSMQNLDASIFDLAPIPMWLEDYSQIKIQFDLWRSQGVVDLKAFLSEDLERVRSC
CCCCCCHHHHCCCHHHHCCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
AHKIKVIKINQKTLDLFEASSQQELCSQLHQIFQQDMLHSHLYELVDLWDGKTQFSSQAV
HHCEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHE
NYTLSGKRLDIQLHGQILPGYENCLSRVLLTTEDVTNYQNALRLEEKNRRLAESRFNYSP
EEEECCCEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TSLWVEDFTRVKMRLDQLRDIGIDDFRTFLDVHPEFVNQCVEDILILDVNQATLDLFQAP
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHEECCCHHHHHHHHCC
DKATLLKNTHKIFAKEMASTFREQLIELWKGNIHHQREAINYALDGSIRNVLLQFTVFPG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHEECCC
YEHNWSVVQVALTDITARKKAENYLEYLGKHDVLTKLHNRSFYTEEINRLERSIVRPVSC
CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCHHHE
IFLDMNGLKDVNDHLGHDAGDDLLRRVGHILTQAIQQTSYTASRIGGDEFVILMPGTEET
EEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
AVMQILQTIYELLNIDNQFYSSQPISIAIGYATTQHNESIEDMLKRADQDMYKKKRDYHI
HHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]