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The map label for this gene is cyoD [H]

Identifier: 50085513

GI number: 50085513

Start: 2395141

End: 2395467

Strand: Direct

Name: cyoD [H]

Synonym: ACIAD2428

Alternate gene names: 50085513

Gene position: 2395141-2395467 (Clockwise)

Preceding gene: 50085512

Following gene: 50085514

Centisome position: 66.56

GC content: 38.23

Gene sequence:

>327_bases
ATGAGTCATGATCATAATTCTGCTGGCGCATCACATGGTAACTTCAAGCAGTATACGATTGGTTTCATTTTATCAGTCGT
ATTAACTATCATTCCTTTTGGAATGGTGATGGCTGGAGGCTTTGGTCGTGGTCTTTTAATGACTGTGATCGGAATCACTG
CTGTGGCTCAGGTGCTTGTACAACTTGTATTCTTCTTACATATGAATACATCTTCTGAACAGCGCTGGAACCTAATCGCG
TTCATTTATACAGTTCTATGTATTGCTATCTTGCTTGTTGGTTCTGTATGGATTATGAATTATCTACATTTCAACATGAT
GATCTAA

Upstream 100 bases:

>100_bases
CAACCACACGTCGTCTAGCTTGTCTAAGCTTGTTCTGGCACTTCCTTGACATCGTATGGATCTGTGTATTCAGCGTCGTA
TACTTAATGGGAGTTCTCTA

Downstream 100 bases:

>100_bases
ACTGGTTGTCATGCTAAAAAAGTATTTATTCCTGACAAAACCAGGAATTCTGTTTGGTAATTTCATTACCACTTTGGGCG
GCTTCTTCTTAGCCGCCCAA

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MSHDHNSAGASHGNFKQYTIGFILSVVLTIIPFGMVMAGGFGRGLLMTVIGITAVAQVLVQLVFFLHMNTSSEQRWNLIA
FIYTVLCIAILLVGSVWIMNYLHFNMMI

Sequences:

>Translated_108_residues
MSHDHNSAGASHGNFKQYTIGFILSVVLTIIPFGMVMAGGFGRGLLMTVIGITAVAQVLVQLVFFLHMNTSSEQRWNLIA
FIYTVLCIAILLVGSVWIMNYLHFNMMI
>Mature_107_residues
SHDHNSAGASHGNFKQYTIGFILSVVLTIIPFGMVMAGGFGRGLLMTVIGITAVAQVLVQLVFFLHMNTSSEQRWNLIAF
IYTVLCIAILLVGSVWIMNYLHFNMMI

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=108, Percent_Identity=56.4814814814815, Blast_Score=121, Evalue=8e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 11966; Mature: 11834

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.4 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDHNSAGASHGNFKQYTIGFILSVVLTIIPFGMVMAGGFGRGLLMTVIGITAVAQVLV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
QLVFFLHMNTSSEQRWNLIAFIYTVLCIAILLVGSVWIMNYLHFNMMI
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SHDHNSAGASHGNFKQYTIGFILSVVLTIIPFGMVMAGGFGRGLLMTVIGITAVAQVLV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
QLVFFLHMNTSSEQRWNLIAFIYTVLCIAILLVGSVWIMNYLHFNMMI
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]