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The map label for this gene is hfq [H]

Identifier: 50085463

GI number: 50085463

Start: 2332553

End: 2333077

Strand: Reverse

Name: hfq [H]

Synonym: ACIAD2373

Alternate gene names: 50085463

Gene position: 2333077-2332553 (Counterclockwise)

Preceding gene: 50085464

Following gene: 50085460

Centisome position: 64.83

GC content: 48.76

Gene sequence:

>525_bases
ATGTCTAAAGGTCAAACATTACAAGATCCGTTCTTAAATTCTCTCCGTAAAGAACGTATTCCTGTGTCTATTTTTCTTGT
GAACGGTATTAAATTACAAGGCCACATTGAATCTTTTGACCAATACGTAGTGTTATTAAAAAATACTGTAAGCCAAATGG
TTTATAAGCACGCGATTTCAACCGTAGTGCCTGCACGTAATCCACGTCCAGCTGGCGCGCCTACTGGTGCTCCACAAGGT
GGTGGCTTCGGTGGTCAAGGTGGCGGCTTTGGCGGTCAAGGTGGTGGCTTTGGTGGTCAAGGTGGTGGCTTTGGTGGTCA
AGGTGGCGGCTTTGGTGGTCAAGGTACTGGCTTTGGTGGTCAAGGTGGTGGCTTCGGTGGTCAAGGCGGCTTCGGTGGTC
AAGGCGGCTTTGGTGGTCAAGGTGGCTTCGGTGGTCAAGGCGGCTTCGGTGGTCAAGGTGGTTCAGGCTTTGACAACGAT
ACTAAATTTGAAGATGGTCAGGAAGACGATTCTAACAATCGTTAA

Upstream 100 bases:

>100_bases
TTATGGATAAAGCAAAATTTACATACTATCTTTTTTATAAATTTTAATTGAAAAATAAAGATGGTTTTTGCGCTGATTTT
AAATTTTTTGGAGTTATAAA

Downstream 100 bases:

>100_bases
TCCTAAAACCGTTTGATAAAGACCCCAATTTCATATTGGGGTTTTTTTATGGTAAAAATTTTAAATAAAAAACCAGCCTG
GATTGAACTGCACCCCGAAA

Product: host factor I for bacteriophage Q beta replication, a growth-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRPAGAPTGAPQG
GGFGGQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGTGFGGQGGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGSGFDND
TKFEDGQEDDSNNR

Sequences:

>Translated_174_residues
MSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRPAGAPTGAPQG
GGFGGQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGTGFGGQGGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGSGFDND
TKFEDGQEDDSNNR
>Mature_173_residues
SKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPRPAGAPTGAPQGG
GFGGQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGTGFGGQGGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGSGFDNDT
KFEDGQEDDSNNR

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=66, Percent_Identity=84.8484848484848, Blast_Score=131, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 17069; Mature: 16938

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAIS
CCCCCCCHHHHHHHHHHHCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
TVVPARNPRPAGAPTGAPQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGTGFGG
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QGGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGSGFDNDTKFEDGQEDDSNNR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAIS
CCCCCCHHHHHHHHHHHCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
TVVPARNPRPAGAPTGAPQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGGGFGGQGTGFGG
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
QGGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGSGFDNDTKFEDGQEDDSNNR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA