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The map label for this gene is ompC [C]

Identifier: 50085414

GI number: 50085414

Start: 2283333

End: 2284439

Strand: Direct

Name: ompC [C]

Synonym: ACIAD2319

Alternate gene names: 50085414

Gene position: 2283333-2284439 (Clockwise)

Preceding gene: 50085413

Following gene: 50085417

Centisome position: 63.45

GC content: 39.75

Gene sequence:

>1107_bases
TTGATGAAAAAATTACTTCTTGCAGCGACTGTTGCAACACTGAGCCTAAGCGCAGCACACGCAGCTCCTACCCTTTACGG
TAAGATCAATTTGACGCTTGACCAAGTAGATAACAGCGATTTTGCTGGAAATAATGTCACTGCACTAAATTCGAATGCAT
CCCGAATTGGTATTAAGGGCGAAGAAAAACTGACTGATAATATCTCAGTGTTATATTTAGCGGAATGGGCAATTTCAACT
GATGGTTCTGGCTCTGATACAGACTTAAGTGCACGTAACCGCTACTTAGGTTTAAAATTTAAGGACATTGGCTCTCTTAA
AGCAGGTAAATACGATTCATATTTCAAAAGTGCCGCTGGAAATAATCAAGATATTTTCAATGACCACACGATATTGGATA
TGACGTCTGTACTTCACGGTGAAGAACGTTTAAATAACGTGATTGGTTTTGAGACCGATAAAAACCTGATCATCCCTGGC
TTACAGTTTAATATCATGTCACAACAAGGCGAAGATACCAAAACTGACAATACAACGCTTGGACAAGAAGGTAAGCGTAA
CGGCTTTGGTGATGGAATTTCTACCTCATTAAGCTATGACAACAAAGACTATGGTTTGTCTGCCGCAATTGCAGGTAACT
TTGGTGTGGCTGGTAAATATAATGCCTACAGCCTTTCTGGAATCTACTCGGATGCCATTCGTGTAACAGGATCATTTGAT
TTTAGCAAATACGGCGTTGACGGCTTGGTGTTTGGTGCATTATGGCAAAATGCAAAACCAACTGATGATACTGTTTTAAC
TGTTTCAGGAACAGGAACCAGCGCGGTAACTACAACCTTTAAAGGGCTTGAAGAAGATGCATTCAGCTTAACTGCTGCGT
ATGTAATTCCTTCTACACCTTGGAAAATCAAAGGTGAGTATGTTGAATCGAATACCTCTGTAGATAGTCGTTCTGATCGT
AAAATTTCTCAGTATGGTCTAGGTGTTGACTACAACCTCAATAAACAAGCACGTTTATATGGTGTTCTAGCTCAACAAAA
ACGTGACTGGTTGGCAAGTGATGATAAGAAAACTGTAGTCGGTTTAGGTATGGAATATAATTTCTAA

Upstream 100 bases:

>100_bases
CTGCTTAGCAAGTTGGTGAGCTTATGTAACTTTTTGTACAAAAGTCAGCTAAAAAAAGTTAATTCGGCTTTTTGCCAGTT
ACAAAAAAATCTGGAGATAT

Downstream 100 bases:

>100_bases
GTAAATTCTCCATGCATAAAAAAATAAAAGGGCATCTACCCTTTTATTTTTTTAAGAATCCTGACACCAGATTTAAAACA
TTTTGAATATCCTGATTTGC

Product: porin precursor

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MMKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNASRIGIKGEEKLTDNISVLYLAEWAIST
DGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYFKSAAGNNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNLIIPG
LQFNIMSQQGEDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGVAGKYNAYSLSGIYSDAIRVTGSFD
FSKYGVDGLVFGALWQNAKPTDDTVLTVSGTGTSAVTTTFKGLEEDAFSLTAAYVIPSTPWKIKGEYVESNTSVDSRSDR
KISQYGLGVDYNLNKQARLYGVLAQQKRDWLASDDKKTVVGLGMEYNF

Sequences:

>Translated_368_residues
MMKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNASRIGIKGEEKLTDNISVLYLAEWAIST
DGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYFKSAAGNNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNLIIPG
LQFNIMSQQGEDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGVAGKYNAYSLSGIYSDAIRVTGSFD
FSKYGVDGLVFGALWQNAKPTDDTVLTVSGTGTSAVTTTFKGLEEDAFSLTAAYVIPSTPWKIKGEYVESNTSVDSRSDR
KISQYGLGVDYNLNKQARLYGVLAQQKRDWLASDDKKTVVGLGMEYNF
>Mature_368_residues
MMKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNASRIGIKGEEKLTDNISVLYLAEWAIST
DGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYFKSAAGNNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNLIIPG
LQFNIMSQQGEDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGVAGKYNAYSLSGIYSDAIRVTGSFD
FSKYGVDGLVFGALWQNAKPTDDTVLTVSGTGTSAVTTTFKGLEEDAFSLTAAYVIPSTPWKIKGEYVESNTSVDSRSDR
KISQYGLGVDYNLNKQARLYGVLAQQKRDWLASDDKKTVVGLGMEYNF

Specific function: Forms Passive Diffusion Pores Which Allow Small Molecular Weight Hydrophilic Materials Across The Outer Membrane. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39724; Mature: 39724

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNASRIGIKG
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCEEEECCCCCEECCCC
EEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYFKSAAG
CCHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCC
NNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNLIIPGLQFNIMSQQGEDTKTDNTTL
CCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCEEECCEEEEEECCCCCCCCCCCCCC
GQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGVAGKYNAYSLSGIYSDAIRVTGSFD
CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCEEECCEEECEEEEEECCC
FSKYGVDGLVFGALWQNAKPTDDTVLTVSGTGTSAVTTTFKGLEEDAFSLTAAYVIPSTP
CHHHCCCCEEEEHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCHHEEEEEEEECCCC
WKIKGEYVESNTSVDSRSDRKISQYGLGVDYNLNKQARLYGVLAQQKRDWLASDDKKTVV
CEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
GLGMEYNF
EECEEECC
>Mature Secondary Structure
MMKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNASRIGIKG
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCCCEEEECCCCCEECCCC
EEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYFKSAAG
CCHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCC
NNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNLIIPGLQFNIMSQQGEDTKTDNTTL
CCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCEEECCEEEEEECCCCCCCCCCCCCC
GQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGVAGKYNAYSLSGIYSDAIRVTGSFD
CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCEEECCEEECEEEEEECCC
FSKYGVDGLVFGALWQNAKPTDDTVLTVSGTGTSAVTTTFKGLEEDAFSLTAAYVIPSTP
CHHHCCCCEEEEHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCHHEEEEEEEECCCC
WKIKGEYVESNTSVDSRSDRKISQYGLGVDYNLNKQARLYGVLAQQKRDWLASDDKKTVV
CEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
GLGMEYNF
EECEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA