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The map label for this gene is ygiD [H]

Identifier: 50085354

GI number: 50085354

Start: 2220290

End: 2221114

Strand: Reverse

Name: ygiD [H]

Synonym: ACIAD2249

Alternate gene names: 50085354

Gene position: 2221114-2220290 (Counterclockwise)

Preceding gene: 50085355

Following gene: 50085350

Centisome position: 61.72

GC content: 44.48

Gene sequence:

>825_bases
ATGTCAGCAGTCAATCAACGACAACCTGTATTTTTTATTTCTCATGGTGGTGGGCCATGGCCTTGGATGCCAAATGCACT
TAATAATGTGTATGCTCAATTGGCGCAGTCACTCGCAAGTCTTCTGGACTCGTTACCTAAAAAGCCAGATGCGATTCTGA
TGATCTCTGCACATTGGGAGGCGCCTGAATTTACAGTACAGACCGCACTCCAACCTGACATGATCTACGACTACGGTGGC
TTCCCTCCACATACTTATCAAGTGCATTATGCATCTTCTGGATCACCTGAGTTAGCCGAGCGGGTTGTCGATTTACTTGA
GCAAGCCCATATCAAAGTCTCAAGTGATGATGGGCGTGGTTATGATCATGGTATGTTTTCTCCAATGCAGATCATCAATC
CTGCGGCAGATATTCCAGTCGTTCAGCTTTCTTTGAAAAAAGGTTTAAATCCTCAAGAACACATTGAGATGGGGCGGGCC
TTAGCTGCCTTACGTGATGAAAATATTCTGATTATTGCCAGTGGATTGAGCTATCACAATCTTCGAATGTTTAATGCAAA
TGCTGCTGGACCATCACGTGATTTTGATCAGTGGTTATATGAAGCTGTGGTTAAACATCAAGGAAGTGAGCGAAATCAAT
TGCTTCAACAATGGGAGTTGGCACCCGCTGCGCGGATTGCACACCCACGTGAAGAACACTTATTACCTTTAATGGTGGCA
GTGGGAGCAGCAGAACTTGAACAGGGTAGCCGTAATTATCATGAGACAGCATTTTTAGGGGGCTTATCTGTGTCAAGTTT
TGCTTTTGGTGATTTGCGACATTAA

Upstream 100 bases:

>100_bases
TCTAAAAATACGTTGAATTGTTCTATTCTTGCGGTTGTCGTTGCATGAAGTGATCGATTAAATTATCCAATAAGTTTGAA
AATACTAAAGGGGAAGTTCA

Downstream 100 bases:

>100_bases
TCGGAATGTTTATTCATTATTTCACCATAGATCAACTTTGAATCGTATTCACAAAGTCACTTTAAAAACCAGATGATGTA
TCTGGTTTTTTATATGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSAVNQRQPVFFISHGGGPWPWMPNALNNVYAQLAQSLASLLDSLPKKPDAILMISAHWEAPEFTVQTALQPDMIYDYGG
FPPHTYQVHYASSGSPELAERVVDLLEQAHIKVSSDDGRGYDHGMFSPMQIINPAADIPVVQLSLKKGLNPQEHIEMGRA
LAALRDENILIIASGLSYHNLRMFNANAAGPSRDFDQWLYEAVVKHQGSERNQLLQQWELAPAARIAHPREEHLLPLMVA
VGAAELEQGSRNYHETAFLGGLSVSSFAFGDLRH

Sequences:

>Translated_274_residues
MSAVNQRQPVFFISHGGGPWPWMPNALNNVYAQLAQSLASLLDSLPKKPDAILMISAHWEAPEFTVQTALQPDMIYDYGG
FPPHTYQVHYASSGSPELAERVVDLLEQAHIKVSSDDGRGYDHGMFSPMQIINPAADIPVVQLSLKKGLNPQEHIEMGRA
LAALRDENILIIASGLSYHNLRMFNANAAGPSRDFDQWLYEAVVKHQGSERNQLLQQWELAPAARIAHPREEHLLPLMVA
VGAAELEQGSRNYHETAFLGGLSVSSFAFGDLRH
>Mature_273_residues
SAVNQRQPVFFISHGGGPWPWMPNALNNVYAQLAQSLASLLDSLPKKPDAILMISAHWEAPEFTVQTALQPDMIYDYGGF
PPHTYQVHYASSGSPELAERVVDLLEQAHIKVSSDDGRGYDHGMFSPMQIINPAADIPVVQLSLKKGLNPQEHIEMGRAL
AALRDENILIIASGLSYHNLRMFNANAAGPSRDFDQWLYEAVVKHQGSERNQLLQQWELAPAARIAHPREEHLLPLMVAV
GAAELEQGSRNYHETAFLGGLSVSSFAFGDLRH

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=271, Percent_Identity=35.0553505535055, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 30325; Mature: 30193

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVNQRQPVFFISHGGGPWPWMPNALNNVYAQLAQSLASLLDSLPKKPDAILMISAHWE
CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
APEFTVQTALQPDMIYDYGGFPPHTYQVHYASSGSPELAERVVDLLEQAHIKVSSDDGRG
CCCEEEHHCCCCCCEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCEEEECCCCCC
YDHGMFSPMQIINPAADIPVVQLSLKKGLNPQEHIEMGRALAALRDENILIIASGLSYHN
CCCCCCCHHHHHCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCE
LRMFNANAAGPSRDFDQWLYEAVVKHQGSERNQLLQQWELAPAARIAHPREEHLLPLMVA
EEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
VGAAELEQGSRNYHETAFLGGLSVSSFAFGDLRH
HHHHHHHHCCCCHHHHHHCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
SAVNQRQPVFFISHGGGPWPWMPNALNNVYAQLAQSLASLLDSLPKKPDAILMISAHWE
CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
APEFTVQTALQPDMIYDYGGFPPHTYQVHYASSGSPELAERVVDLLEQAHIKVSSDDGRG
CCCEEEHHCCCCCCEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCEEEECCCCCC
YDHGMFSPMQIINPAADIPVVQLSLKKGLNPQEHIEMGRALAALRDENILIIASGLSYHN
CCCCCCCHHHHHCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCE
LRMFNANAAGPSRDFDQWLYEAVVKHQGSERNQLLQQWELAPAARIAHPREEHLLPLMVA
EEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
VGAAELEQGSRNYHETAFLGGLSVSSFAFGDLRH
HHHHHHHHCCCCHHHHHHCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]