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The map label for this gene is ydfH [C]

Identifier: 50085350

GI number: 50085350

Start: 2215659

End: 2216396

Strand: Reverse

Name: ydfH [C]

Synonym: ACIAD2245

Alternate gene names: 50085350

Gene position: 2216396-2215659 (Counterclockwise)

Preceding gene: 50085354

Following gene: 50085348

Centisome position: 61.59

GC content: 39.3

Gene sequence:

>738_bases
CTGTATGAGGAACGCATGTCATTATCTGCACCAGAAAAAAGCAATCATCTGTCCAATAATGAAGACACCGATCAGCATAT
TTATCATGCAATTGTTGATGCCATTATGAATCGACAAATTGGGCCAGGTACTCGTTTGGTCGAAGCACCGCTGTGTGAGG
CTTTCGGGGTAACACGTGGAGTATTGCGTCGTGTGTTTGTCAAACTTGCGCATGATCGGGTGATTGAAATACAGCCCAAT
CGTGGTGCAGTGGTTCCTGAACATGATTTTCAGGAAACAGAAGCTATCTTTGAAGCACGTAGTATGCTTGAAATTGGCAC
AGTTAAAAAATTGGCACGAAAATATAAACAGCTTGATCTTTCTGAATTGAAAGCGTTAATAGATAAAGAAGAAAAAGTGC
GTAGCGCTGGTAATCTCAAAGAGTGGATTAAGCTTTCTGGTGATTTTCATATTTGTTTATGTGAAGCCAACCATAATCCG
ATTGTGACAGGGTATTTGCAAACCTTAATTGCTAGAACCTCGTTATTAATTGGAATGTATGAAACCAAACCCAACCATTG
TTCTGTTGAAGAGCATCATGCGATTTTGGAGGCAATTGAGCAGGGTGATGAACAAAAAGCGATTAAGCTCATGGAAGCAC
ATTTAGGAGAGTATGCGCGTAGCTTTCTGGATGAACAACCAGATACCAAGTCACCTAATTTAATAGATATTTTTCAGAAT
AAAAAACTTCAAAAATAA

Upstream 100 bases:

>100_bases
TGTATGGAATATATAAAAATTGTGAACAACTTGCTAAACTATATATCAAATAAAATATAGTTTTATTCTAAAGTCCTGTT
GAAAAAATCCGCTTTTTGCT

Downstream 100 bases:

>100_bases
TTGAATTTAAAAAAACCGAGAAACTATTCTCGGTTTTTTTAAACGGTAATTTCTTACTTTTCTACGAAAGCACGTTCGAT
CACGTAGTCACCAAGAACAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR Family Regulatory Protein; Transcription Regulator Protein; FCD Domain Protein; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator GntR Family Protein; GntR Family Transcription Regulator Protein; Transcriptional Regulator Gntr Family; GntR Domain-Containing Protein; Transcriptional Regulator GntR; GntR-Family Regulatory Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; Bacterial Regulatory Protein; GntR Family Transcription Regulator

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MYEERMSLSAPEKSNHLSNNEDTDQHIYHAIVDAIMNRQIGPGTRLVEAPLCEAFGVTRGVLRRVFVKLAHDRVIEIQPN
RGAVVPEHDFQETEAIFEARSMLEIGTVKKLARKYKQLDLSELKALIDKEEKVRSAGNLKEWIKLSGDFHICLCEANHNP
IVTGYLQTLIARTSLLIGMYETKPNHCSVEEHHAILEAIEQGDEQKAIKLMEAHLGEYARSFLDEQPDTKSPNLIDIFQN
KKLQK

Sequences:

>Translated_245_residues
MYEERMSLSAPEKSNHLSNNEDTDQHIYHAIVDAIMNRQIGPGTRLVEAPLCEAFGVTRGVLRRVFVKLAHDRVIEIQPN
RGAVVPEHDFQETEAIFEARSMLEIGTVKKLARKYKQLDLSELKALIDKEEKVRSAGNLKEWIKLSGDFHICLCEANHNP
IVTGYLQTLIARTSLLIGMYETKPNHCSVEEHHAILEAIEQGDEQKAIKLMEAHLGEYARSFLDEQPDTKSPNLIDIFQN
KKLQK
>Mature_245_residues
MYEERMSLSAPEKSNHLSNNEDTDQHIYHAIVDAIMNRQIGPGTRLVEAPLCEAFGVTRGVLRRVFVKLAHDRVIEIQPN
RGAVVPEHDFQETEAIFEARSMLEIGTVKKLARKYKQLDLSELKALIDKEEKVRSAGNLKEWIKLSGDFHICLCEANHNP
IVTGYLQTLIARTSLLIGMYETKPNHCSVEEHHAILEAIEQGDEQKAIKLMEAHLGEYARSFLDEQPDTKSPNLIDIFQN
KKLQK

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27895; Mature: 27895

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEERMSLSAPEKSNHLSNNEDTDQHIYHAIVDAIMNRQIGPGTRLVEAPLCEAFGVTRG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VLRRVFVKLAHDRVIEIQPNRGAVVPEHDFQETEAIFEARSMLEIGTVKKLARKYKQLDL
HHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SELKALIDKEEKVRSAGNLKEWIKLSGDFHICLCEANHNPIVTGYLQTLIARTSLLIGMY
HHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
ETKPNHCSVEEHHAILEAIEQGDEQKAIKLMEAHLGEYARSFLDEQPDTKSPNLIDIFQN
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHCC
KKLQK
CCCCC
>Mature Secondary Structure
MYEERMSLSAPEKSNHLSNNEDTDQHIYHAIVDAIMNRQIGPGTRLVEAPLCEAFGVTRG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VLRRVFVKLAHDRVIEIQPNRGAVVPEHDFQETEAIFEARSMLEIGTVKKLARKYKQLDL
HHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SELKALIDKEEKVRSAGNLKEWIKLSGDFHICLCEANHNPIVTGYLQTLIARTSLLIGMY
HHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
ETKPNHCSVEEHHAILEAIEQGDEQKAIKLMEAHLGEYARSFLDEQPDTKSPNLIDIFQN
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHCC
KKLQK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA