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The map label for this gene is fdhD

Identifier: 50085056

GI number: 50085056

Start: 1908406

End: 1909227

Strand: Direct

Name: fdhD

Synonym: ACIAD1916

Alternate gene names: 50085056

Gene position: 1908406-1909227 (Clockwise)

Preceding gene: 50085055

Following gene: 50085058

Centisome position: 53.03

GC content: 42.46

Gene sequence:

>822_bases
ATGGATAGTTTAACCGAAACGACAAATGCCTTGAGTAATGATACTCATGCTCAAGGCTATCAAAGCGTTTCCACTACTCG
GCATGTCGGTCACATACGTGAGGTTGTGTATGACTGTGTAGTAGAGGAATTCCCTGTTGCTTTAATCTATAACGGGATCT
CTCATGCAGTCATGATGACAACGCCGCTCGATCTTGAAGTGTTTGCAATTGGATTTAGTCTGACAGAAGCCATTATTGAT
CATCCACGACAGATTTATGATATTGAAATTATAAAAAGCGATTTGGGCATACAGGTAGAAATAACAATCGCGTCTGAGGC
ATTTATAAAGTTAAAAACACATAGACGTACACTTGCAGGTCAAACGGGTTGTGGTATATGTGGCATCGAGAGTTTGCAAC
AGATTCAACATACCTTTCCCCCAGTGACTCATGATTTTTTTGTACACTGGCTAGATCAAATACCAGATGCCATGGTTCAA
TTACAGCAGCAGCAACCAATTTCTGCTGTCACGGGAGGTGCACATGCGGCAGCTTGGGTCGTGAATGGTAACATTCTAAC
TGTGTTTGAAGATGTGGGACGTCATAATGCTCTCGATAAACTTCTCGGCCATTTGGTCAAGCATGATATCGATCGCTCAC
AAGGGTTTGTCTTAATGACAAGTCGGGCAAGTTATGAGCTTGTTAAAAAATGTGCGCAACTTAACATTTCACTTTTGGCT
ACCATTTCTGCGCCTACAAGCTTAGCGATAGAGCTTGCGAAGCGTAGTGGCCTAAAACTGGCTAGTTTTTGCCGTCAGTC
TCGTTATGTGGTTTACTCATAA

Upstream 100 bases:

>100_bases
GCAAAAATACCTGCATCCAAAAGTATTCCTGTAATCTTACATCCTGGTCAAGCGCCAGAACATTTTAATCTCGCTGCGCC
CGTCGATCCTGAACATGCAA

Downstream 100 bases:

>100_bases
CACCACGTTAATAGGACTCGATTTACGTTATTCATGTTTGAGATCATATGCCACAATCGCAGTATACTTGTAAAAATCGT
TTTCAGATCCGACATAAGCA

Product: formate dehydrogenase formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MDSLTETTNALSNDTHAQGYQSVSTTRHVGHIREVVYDCVVEEFPVALIYNGISHAVMMTTPLDLEVFAIGFSLTEAIID
HPRQIYDIEIIKSDLGIQVEITIASEAFIKLKTHRRTLAGQTGCGICGIESLQQIQHTFPPVTHDFFVHWLDQIPDAMVQ
LQQQQPISAVTGGAHAAAWVVNGNILTVFEDVGRHNALDKLLGHLVKHDIDRSQGFVLMTSRASYELVKKCAQLNISLLA
TISAPTSLAIELAKRSGLKLASFCRQSRYVVYS

Sequences:

>Translated_273_residues
MDSLTETTNALSNDTHAQGYQSVSTTRHVGHIREVVYDCVVEEFPVALIYNGISHAVMMTTPLDLEVFAIGFSLTEAIID
HPRQIYDIEIIKSDLGIQVEITIASEAFIKLKTHRRTLAGQTGCGICGIESLQQIQHTFPPVTHDFFVHWLDQIPDAMVQ
LQQQQPISAVTGGAHAAAWVVNGNILTVFEDVGRHNALDKLLGHLVKHDIDRSQGFVLMTSRASYELVKKCAQLNISLLA
TISAPTSLAIELAKRSGLKLASFCRQSRYVVYS
>Mature_273_residues
MDSLTETTNALSNDTHAQGYQSVSTTRHVGHIREVVYDCVVEEFPVALIYNGISHAVMMTTPLDLEVFAIGFSLTEAIID
HPRQIYDIEIIKSDLGIQVEITIASEAFIKLKTHRRTLAGQTGCGICGIESLQQIQHTFPPVTHDFFVHWLDQIPDAMVQ
LQQQQPISAVTGGAHAAAWVVNGNILTVFEDVGRHNALDKLLGHLVKHDIDRSQGFVLMTSRASYELVKKCAQLNISLLA
TISAPTSLAIELAKRSGLKLASFCRQSRYVVYS

Specific function: Necessary for formate dehydrogenase activity

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family

Homologues:

Organism=Escherichia coli, GI1790329, Length=239, Percent_Identity=48.1171548117155, Blast_Score=226, Evalue=8e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FDHD_ACIAD (Q6FB19)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_046566.1
- ProteinModelPortal:   Q6FB19
- SMR:   Q6FB19
- STRING:   Q6FB19
- GeneID:   2878538
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD1916
- NMPDR:   fig|62977.3.peg.1828
- eggNOG:   COG1526
- HOGENOM:   HBG732883
- OMA:   DYVGQEW
- PhylomeDB:   Q6FB19
- BioCyc:   ASP62977:ACIAD1916-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00187
- InterPro:   IPR003786
- TIGRFAMs:   TIGR00129

Pfam domain/function: PF02634 FdhD-NarQ

EC number: NA

Molecular weight: Translated: 30124; Mature: 30124

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLTETTNALSNDTHAQGYQSVSTTRHVGHIREVVYDCVVEEFPVALIYNGISHAVMMT
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEE
TPLDLEVFAIGFSLTEAIIDHPRQIYDIEIIKSDLGIQVEITIASEAFIKLKTHRRTLAG
CCCCEEEEEEHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEECCEEEEEHHHHHHHCC
QTGCGICGIESLQQIQHTFPPVTHDFFVHWLDQIPDAMVQLQQQQPISAVTGGAHAAAWV
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEE
VNGNILTVFEDVGRHNALDKLLGHLVKHDIDRSQGFVLMTSRASYELVKKCAQLNISLLA
EECCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCEEEEE
TISAPTSLAIELAKRSGLKLASFCRQSRYVVYS
EECCCHHHHHHHHHHCCCHHHHHHHHCCCEEEC
>Mature Secondary Structure
MDSLTETTNALSNDTHAQGYQSVSTTRHVGHIREVVYDCVVEEFPVALIYNGISHAVMMT
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEE
TPLDLEVFAIGFSLTEAIIDHPRQIYDIEIIKSDLGIQVEITIASEAFIKLKTHRRTLAG
CCCCEEEEEEHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEECCEEEEEHHHHHHHCC
QTGCGICGIESLQQIQHTFPPVTHDFFVHWLDQIPDAMVQLQQQQPISAVTGGAHAAAWV
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEE
VNGNILTVFEDVGRHNALDKLLGHLVKHDIDRSQGFVLMTSRASYELVKKCAQLNISLLA
EECCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCEEEEE
TISAPTSLAIELAKRSGLKLASFCRQSRYVVYS
EECCCHHHHHHHHHHCCCHHHHHHHHCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA