| Definition | Acinetobacter sp. ADP1 chromosome, complete genome. |
|---|---|
| Accession | NC_005966 |
| Length | 3,598,621 |
Click here to switch to the map view.
The map label for this gene is ydfG [C]
Identifier: 50085024
GI number: 50085024
Start: 1875793
End: 1876542
Strand: Reverse
Name: ydfG [C]
Synonym: ACIAD1883
Alternate gene names: 50085024
Gene position: 1876542-1875793 (Counterclockwise)
Preceding gene: 50085025
Following gene: 50085023
Centisome position: 52.15
GC content: 40.67
Gene sequence:
>750_bases ATGACCATGACGAAAACAATTTTAATTACTGGGGCAAGCTCAGGCCTAGGCGCAGGTATGGCAAAAGAATTTGCCAAGAA AGGCTATAATTTAGCAATTTGTGCGAGGCGATTAGAACGCTTAGAGACATTAAAAACCGAATTAGAACGTCACTACGATG TTAAAATTATCGCTAAATCACTGGATGTCACAAATTACGACCAAGTCTTTGAGGTTTTTAACGCATTTGAACAAGAGTTT GGGCAATTAGATCGTATCATTGTCAATGCTGGTATTGGTGAAGGTAGACGAGTCGGTAAAGGGCATTTTGATATAAATCG TAAAACGGCCGAAACCAATTTTATTTCTGCTTTAGCACAGTGTGAAGCAGCTGTTGAAATATTCCGTAAACAAAATTCGG GACATTTAGTAGTAATCTCGTCCATGAGTGCGATGCGTGGTTTACCTAAACATTTATCCACTTATGCTGCGAGCAAGGCA GGTGTAGCACATCTGGCTGAGGGAATTCGTGCCGAACTGATTGACACGCCCATCAAGGTTTCTACAATTTTTCCAGGCTA TATTCGTACCGAGCTGAACCAAGGTGCCAAGCAGCTTCCTTTTGAAATCGATGAACAGACAGGGGCACGGTTACTGGTTA AAGCAATTGAAAAGGAACCTGTAAAAGCTTATGTACCACAATGGCCATGGTTACCGATTGGAATTGCCATGAAAGTCTTA CCTTTAAAATTAGTCAATAAATTGAGTTAA
Upstream 100 bases:
>100_bases TTAAGACTGGTAGGGAATGAGCCACAACTTTTAAGCTTGAATGAACATCATTTTATAAAAGTAGTAAATCCAGCATTACT GACATGGATATAAAGGAACA
Downstream 100 bases:
>100_bases AATGATTGACATAGAATCTCATCCTTTAGAACCGTTTTTACCATCAAATGCGCGTTTGCTCATGCTAGGGAGTTTTCCAC CGCCTAAAGAGCGTTGGAAA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MTMTKTILITGASSGLGAGMAKEFAKKGYNLAICARRLERLETLKTELERHYDVKIIAKSLDVTNYDQVFEVFNAFEQEF GQLDRIIVNAGIGEGRRVGKGHFDINRKTAETNFISALAQCEAAVEIFRKQNSGHLVVISSMSAMRGLPKHLSTYAASKA GVAHLAEGIRAELIDTPIKVSTIFPGYIRTELNQGAKQLPFEIDEQTGARLLVKAIEKEPVKAYVPQWPWLPIGIAMKVL PLKLVNKLS
Sequences:
>Translated_249_residues MTMTKTILITGASSGLGAGMAKEFAKKGYNLAICARRLERLETLKTELERHYDVKIIAKSLDVTNYDQVFEVFNAFEQEF GQLDRIIVNAGIGEGRRVGKGHFDINRKTAETNFISALAQCEAAVEIFRKQNSGHLVVISSMSAMRGLPKHLSTYAASKA GVAHLAEGIRAELIDTPIKVSTIFPGYIRTELNQGAKQLPFEIDEQTGARLLVKAIEKEPVKAYVPQWPWLPIGIAMKVL PLKLVNKLS >Mature_248_residues TMTKTILITGASSGLGAGMAKEFAKKGYNLAICARRLERLETLKTELERHYDVKIIAKSLDVTNYDQVFEVFNAFEQEFG QLDRIIVNAGIGEGRRVGKGHFDINRKTAETNFISALAQCEAAVEIFRKQNSGHLVVISSMSAMRGLPKHLSTYAASKAG VAHLAEGIRAELIDTPIKVSTIFPGYIRTELNQGAKQLPFEIDEQTGARLLVKAIEKEPVKAYVPQWPWLPIGIAMKVLP LKLVNKLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=32.8205128205128, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI7706318, Length=255, Percent_Identity=26.6666666666667, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=30.7291666666667, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI40254992, Length=196, Percent_Identity=26.530612244898, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI310128830, Length=251, Percent_Identity=29.0836653386454, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI310115468, Length=251, Percent_Identity=29.0836653386454, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI40807363, Length=246, Percent_Identity=28.4552845528455, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI31542939, Length=225, Percent_Identity=25.7777777777778, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=26.4248704663212, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4503817, Length=183, Percent_Identity=25.1366120218579, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI31543615, Length=227, Percent_Identity=23.7885462555066, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI210032110, Length=228, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI19923817, Length=197, Percent_Identity=24.8730964467005, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=28.4153005464481, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790717, Length=196, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI2367175, Length=207, Percent_Identity=27.0531400966184, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87082100, Length=202, Percent_Identity=29.7029702970297, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789208, Length=214, Percent_Identity=27.5700934579439, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI87082160, Length=199, Percent_Identity=27.6381909547739, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17567345, Length=234, Percent_Identity=28.6324786324786, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI193203115, Length=250, Percent_Identity=27.6, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI193203117, Length=250, Percent_Identity=27.6, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17563726, Length=242, Percent_Identity=30.1652892561983, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17507613, Length=230, Percent_Identity=28.2608695652174, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI32563809, Length=230, Percent_Identity=28.2608695652174, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71997402, Length=190, Percent_Identity=29.4736842105263, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17508895, Length=249, Percent_Identity=23.6947791164659, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17531453, Length=200, Percent_Identity=30.5, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI72000259, Length=253, Percent_Identity=24.901185770751, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=28.5, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562904, Length=201, Percent_Identity=28.3582089552239, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17570069, Length=190, Percent_Identity=29.4736842105263, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562990, Length=206, Percent_Identity=29.6116504854369, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17564282, Length=250, Percent_Identity=26.8, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=27.0408163265306, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=35.0515463917526, Blast_Score=103, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6322227, Length=203, Percent_Identity=25.615763546798, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21358495, Length=234, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=7e-23, Organism=Drosophila melanogaster, GI116007236, Length=194, Percent_Identity=31.9587628865979, Blast_Score=100, Evalue=8e-22, Organism=Drosophila melanogaster, GI24641232, Length=217, Percent_Identity=30.4147465437788, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI28571387, Length=197, Percent_Identity=31.9796954314721, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24663911, Length=198, Percent_Identity=29.7979797979798, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24648693, Length=200, Percent_Identity=28, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI21355889, Length=200, Percent_Identity=28, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24641388, Length=203, Percent_Identity=29.064039408867, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24648944, Length=208, Percent_Identity=29.8076923076923, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI116007234, Length=207, Percent_Identity=27.0531400966184, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=28.8659793814433, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364494, Length=198, Percent_Identity=28.2828282828283, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21357041, Length=190, Percent_Identity=28.9473684210526, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=28.3582089552239, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24649181, Length=199, Percent_Identity=27.1356783919598, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI28571526, Length=208, Percent_Identity=28.3653846153846, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=26.984126984127, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=26.984126984127, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=26.5625, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI23397609, Length=223, Percent_Identity=28.6995515695067, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24584744, Length=192, Percent_Identity=26.5625, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27498; Mature: 27367
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMTKTILITGASSGLGAGMAKEFAKKGYNLAICARRLERLETLKTELERHYDVKIIAKS CCCEEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC LDVTNYDQVFEVFNAFEQEFGQLDRIIVNAGIGEGRRVGKGHFDINRKTAETNFISALAQ CCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH CEAAVEIFRKQNSGHLVVISSMSAMRGLPKHLSTYAASKAGVAHLAEGIRAELIDTPIKV HHHHHHHHHHCCCCCEEEEECCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEE STIFPGYIRTELNQGAKQLPFEIDEQTGARLLVKAIEKEPVKAYVPQWPWLPIGIAMKVL EEECCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHH PLKLVNKLS HHHHHHHCC >Mature Secondary Structure TMTKTILITGASSGLGAGMAKEFAKKGYNLAICARRLERLETLKTELERHYDVKIIAKS CCEEEEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC LDVTNYDQVFEVFNAFEQEFGQLDRIIVNAGIGEGRRVGKGHFDINRKTAETNFISALAQ CCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH CEAAVEIFRKQNSGHLVVISSMSAMRGLPKHLSTYAASKAGVAHLAEGIRAELIDTPIKV HHHHHHHHHHCCCCCEEEEECCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEE STIFPGYIRTELNQGAKQLPFEIDEQTGARLLVKAIEKEPVKAYVPQWPWLPIGIAMKVL EEECCHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHH PLKLVNKLS HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]