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The map label for this gene is glcC [H]

Identifier: 50084637

GI number: 50084637

Start: 1462118

End: 1462867

Strand: Reverse

Name: glcC [H]

Synonym: ACIAD1462

Alternate gene names: 50084637

Gene position: 1462867-1462118 (Counterclockwise)

Preceding gene: 50084642

Following gene: 50084636

Centisome position: 40.65

GC content: 40.53

Gene sequence:

>750_bases
ATGAATCTTTCACTTCATTATAATCTTGATAACAGAAACGCTATGAAACCACATACGCTCGTTAAACGTTCCAGCTCACA
AGTTACAGATCAAGCTGTCGAGGTGATTCATGAGCGTATCCAGCAAGGCTTTTATCCTGTGGGTTCTGCGCTTCCATCAC
AACGTGAATTGTCTGCAGAGTTAGGAATTAGCCGCGCTTCACTTAGAGAAGCCTTGACCCGTCTCGCAGCACTTGGACTG
CTGAATATTATGGCAGGCAAAGGCGCTTACGTGACCGCGATTGAGAGCCAACCCGTTGAACAGTGGAATATCCAATTTAA
AATTTCTTTAAAGGATTTTTATCAACTTCGTTATATTCTTGAAGGATTTAGCGCACTTTTAGCGTGTGAATATATTTCTG
AGAATGATCTGGTTCAGTTGAATACTCATTTCGAACAACTCGAATCTGCCATTCAACAACATAATTGGCAGGAAGCCGCT
GAAAATGATTTTGCTTTTCATCGACATATCATTGATTTAAGTCATAATCAGTCAATTATTCAGAGCCTGAAAAAACAAAC
TGAATGGATGAAGCAGAGCCAGATTTTACCATTTGTACAACCCAATCTTGCGTATAAGACCATTCAGGAACATGAACAAA
TTCTGCAAGCCCTGATCAAACGAGATGGATTAATGGCTGAAAAAGCCATGCGTCAGCATATTATTGGTGCAGCTCAACGC
GCAGGTGTGTACTTTTCTAGTCATTCATAA

Upstream 100 bases:

>100_bases
CGTGTTTTTAATTTTTATTTAATCATTAAATTAACAACTCTTCTGATATTGGCTAGGTATTTCGATGAAAATCAAGTAAA
ACAAACCATGGTCTTTTCCA

Downstream 100 bases:

>100_bases
AGATATCGTTGTGCATCAATTTGCATTTTTGTATAGATTTTAACCTGAAAATTACGCACTATTAATTAGCAACTATTTCT
CTCGCAATAAAAATGTATCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNLSLHYNLDNRNAMKPHTLVKRSSSQVTDQAVEVIHERIQQGFYPVGSALPSQRELSAELGISRASLREALTRLAALGL
LNIMAGKGAYVTAIESQPVEQWNIQFKISLKDFYQLRYILEGFSALLACEYISENDLVQLNTHFEQLESAIQQHNWQEAA
ENDFAFHRHIIDLSHNQSIIQSLKKQTEWMKQSQILPFVQPNLAYKTIQEHEQILQALIKRDGLMAEKAMRQHIIGAAQR
AGVYFSSHS

Sequences:

>Translated_249_residues
MNLSLHYNLDNRNAMKPHTLVKRSSSQVTDQAVEVIHERIQQGFYPVGSALPSQRELSAELGISRASLREALTRLAALGL
LNIMAGKGAYVTAIESQPVEQWNIQFKISLKDFYQLRYILEGFSALLACEYISENDLVQLNTHFEQLESAIQQHNWQEAA
ENDFAFHRHIIDLSHNQSIIQSLKKQTEWMKQSQILPFVQPNLAYKTIQEHEQILQALIKRDGLMAEKAMRQHIIGAAQR
AGVYFSSHS
>Mature_249_residues
MNLSLHYNLDNRNAMKPHTLVKRSSSQVTDQAVEVIHERIQQGFYPVGSALPSQRELSAELGISRASLREALTRLAALGL
LNIMAGKGAYVTAIESQPVEQWNIQFKISLKDFYQLRYILEGFSALLACEYISENDLVQLNTHFEQLESAIQQHNWQEAA
ENDFAFHRHIIDLSHNQSIIQSLKKQTEWMKQSQILPFVQPNLAYKTIQEHEQILQALIKRDGLMAEKAMRQHIIGAAQR
AGVYFSSHS

Specific function: Activator for the glycolate oxidation locus [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789353, Length=226, Percent_Identity=28.7610619469027, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790780, Length=234, Percent_Identity=26.4957264957265, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082208, Length=213, Percent_Identity=28.169014084507, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790032, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI48994955, Length=235, Percent_Identity=26.3829787234043, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787821, Length=210, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28411; Mature: 28411

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSLHYNLDNRNAMKPHTLVKRSSSQVTDQAVEVIHERIQQGFYPVGSALPSQRELSAE
CCEEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHH
LGISRASLREALTRLAALGLLNIMAGKGAYVTAIESQPVEQWNIQFKISLKDFYQLRYIL
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHH
EGFSALLACEYISENDLVQLNTHFEQLESAIQQHNWQEAAENDFAFHRHIIDLSHNQSII
HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCHHHH
QSLKKQTEWMKQSQILPFVQPNLAYKTIQEHEQILQALIKRDGLMAEKAMRQHIIGAAQR
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AGVYFSSHS
CCEEECCCC
>Mature Secondary Structure
MNLSLHYNLDNRNAMKPHTLVKRSSSQVTDQAVEVIHERIQQGFYPVGSALPSQRELSAE
CCEEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHH
LGISRASLREALTRLAALGLLNIMAGKGAYVTAIESQPVEQWNIQFKISLKDFYQLRYIL
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHH
EGFSALLACEYISENDLVQLNTHFEQLESAIQQHNWQEAAENDFAFHRHIIDLSHNQSII
HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCHHHH
QSLKKQTEWMKQSQILPFVQPNLAYKTIQEHEQILQALIKRDGLMAEKAMRQHIIGAAQR
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AGVYFSSHS
CCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]