Click here to switch to the map view.

The map label for this gene is oprD [H]

Identifier: 50084609

GI number: 50084609

Start: 1430277

End: 1431524

Strand: Direct

Name: oprD [H]

Synonym: ACIAD1433

Alternate gene names: 50084609

Gene position: 1430277-1431524 (Clockwise)

Preceding gene: 50084602

Following gene: 50084610

Centisome position: 39.75

GC content: 38.94

Gene sequence:

>1248_bases
ATGCAATATTCAACAACGCGTCTTTATCAGTTTATGCTACGAATGGGGGTTACTTTTGGCATGGTAGGCTGTATCGGTGT
GATACCGACAGTGGTCAATGCTCAAGATAACTGGACACTTAGCCTCAAAAACGCTTATATCGATCGTGATTATGACGGCA
ATGCTGTCAAGGACACCGGTAGCTGGTCGCAAGGCGCTTCTTTATTTTATAAATCTGACTATTACAAAACACCCATCGAT
GGACTTGAAATTGGTGTGGATGGTTCAGTGCAATATGCGGTTCGTTTGAGTCATGACAAGGGGGTGGCGGATACCATTTT
ACCTTTTGATCCGGTAAGCCAAAAGCAGGCGCGTGATTATTTGAAATATGGTGGAACACTTAAACTTAAATATGATCAAA
CCGAACTTCGTGTGGGTGAGCTTTGGCCAGATTTACCTGTCACTGCGGTAGACCGTAGCCGTCAGTTACTGACTTCGTAT
CAGGGCGTTAGCCTCAATTCGAAACTGACCAGTAAACTTACCGGTGAAATCGGGATAATTTCTAAAGTATCACCACGTAA
CGAAGAAGATTTTCGTAAACTGACCTTCACCAAAAATGGCATCAAATACGTTTCGGACGGTTTAAATTACATCGATTTAA
AGTATCAGGTTTTACCGAATTTAAAGCTTGAATATTATTTTGGTAATTTAGAAAATCTTTATAACAAACATTATCTTGGC
GCAGATTATAGCTACAAGCTTTCGCCTGAGGCCTCGTTGCATACCAAGCTTAAATATTTTAATGCCAGTGAAGACAATAA
AAATTACAACATTGATAGCCAAAACTTCGGAATTTTAGAAACTTTGAAATACCGAAATCATACTGTCGGATTGGGTTATC
AGCAAATTGTGGGAGATGCTTACCCACTGCCAGATGGTTTTTTACCTGAAACCTATTTCATCAACTGGAACACCACAGGC
TTCTTTAAATCTGATGAAAAATCAGTTCACTTTATCTATGGCTACGACTTTAAAGATTATGTACCGGGTTTAAATTTTAC
CTTTAAGCATGTGTATGGGTACGACTTTAAGACCGCAACAGGTCTGAAAAACAAAGAGCAAGAAAGCAACTTTATTTTGA
ATTATGCCTTTCAAAATCCAAAGCTAAAAGGCGTCGGATTCCAGTGGTTGTATATCCCGTATAAAGTCCGTTATGGAACG
GATTTTAACGAAAATCGTTTATTTCTAACTTACACCAAAAAATTCTGA

Upstream 100 bases:

>100_bases
TATGTATTTTTGAATATCGACACACGTGATTAAAAAAAATAAATTAGCGATCAATAATTATTTTTATTACATGATCAGGA
TGATCTTTTGGGAAGGACCT

Downstream 100 bases:

>100_bases
GTGCTTGGTGCTAAATCCTTATGGATGGAGGAATGTTATGTCTAGAGAAATTAATGTCAATCAGATGATTGACGACTCAA
AGCTCACGCCGTTTCATTGG

Product: porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MQYSTTRLYQFMLRMGVTFGMVGCIGVIPTVVNAQDNWTLSLKNAYIDRDYDGNAVKDTGSWSQGASLFYKSDYYKTPID
GLEIGVDGSVQYAVRLSHDKGVADTILPFDPVSQKQARDYLKYGGTLKLKYDQTELRVGELWPDLPVTAVDRSRQLLTSY
QGVSLNSKLTSKLTGEIGIISKVSPRNEEDFRKLTFTKNGIKYVSDGLNYIDLKYQVLPNLKLEYYFGNLENLYNKHYLG
ADYSYKLSPEASLHTKLKYFNASEDNKNYNIDSQNFGILETLKYRNHTVGLGYQQIVGDAYPLPDGFLPETYFINWNTTG
FFKSDEKSVHFIYGYDFKDYVPGLNFTFKHVYGYDFKTATGLKNKEQESNFILNYAFQNPKLKGVGFQWLYIPYKVRYGT
DFNENRLFLTYTKKF

Sequences:

>Translated_415_residues
MQYSTTRLYQFMLRMGVTFGMVGCIGVIPTVVNAQDNWTLSLKNAYIDRDYDGNAVKDTGSWSQGASLFYKSDYYKTPID
GLEIGVDGSVQYAVRLSHDKGVADTILPFDPVSQKQARDYLKYGGTLKLKYDQTELRVGELWPDLPVTAVDRSRQLLTSY
QGVSLNSKLTSKLTGEIGIISKVSPRNEEDFRKLTFTKNGIKYVSDGLNYIDLKYQVLPNLKLEYYFGNLENLYNKHYLG
ADYSYKLSPEASLHTKLKYFNASEDNKNYNIDSQNFGILETLKYRNHTVGLGYQQIVGDAYPLPDGFLPETYFINWNTTG
FFKSDEKSVHFIYGYDFKDYVPGLNFTFKHVYGYDFKTATGLKNKEQESNFILNYAFQNPKLKGVGFQWLYIPYKVRYGT
DFNENRLFLTYTKKF
>Mature_415_residues
MQYSTTRLYQFMLRMGVTFGMVGCIGVIPTVVNAQDNWTLSLKNAYIDRDYDGNAVKDTGSWSQGASLFYKSDYYKTPID
GLEIGVDGSVQYAVRLSHDKGVADTILPFDPVSQKQARDYLKYGGTLKLKYDQTELRVGELWPDLPVTAVDRSRQLLTSY
QGVSLNSKLTSKLTGEIGIISKVSPRNEEDFRKLTFTKNGIKYVSDGLNYIDLKYQVLPNLKLEYYFGNLENLYNKHYLG
ADYSYKLSPEASLHTKLKYFNASEDNKNYNIDSQNFGILETLKYRNHTVGLGYQQIVGDAYPLPDGFLPETYFINWNTTG
FFKSDEKSVHFIYGYDFKDYVPGLNFTFKHVYGYDFKTATGLKNKEQESNFILNYAFQNPKLKGVGFQWLYIPYKVRYGT
DFNENRLFLTYTKKF

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 47814; Mature: 47814

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYSTTRLYQFMLRMGVTFGMVGCIGVIPTVVNAQDNWTLSLKNAYIDRDYDGNAVKDTG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEECCCCCCCEECCCC
SWSQGASLFYKSDYYKTPIDGLEIGVDGSVQYAVRLSHDKGVADTILPFDPVSQKQARDY
CCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
LKYGGTLKLKYDQTELRVGELWPDLPVTAVDRSRQLLTSYQGVSLNSKLTSKLTGEIGII
HHCCCEEEEEECHHHEEEECCCCCCCEEHHHHHHHHHHHHCCCEECCHHHHHHCCCEEEE
SKVSPRNEEDFRKLTFTKNGIKYVSDGLNYIDLKYQVLPNLKLEYYFGNLENLYNKHYLG
EECCCCCHHHHEEEEEECCCCHHHHCCCCEEEEEEEECCCCEEEEEECCHHHHHHCCCCC
ADYSYKLSPEASLHTKLKYFNASEDNKNYNIDSQNFGILETLKYRNHTVGLGYQQIVGDA
CCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEECCCHHHHHCCC
YPLPDGFLPETYFINWNTTGFFKSDEKSVHFIYGYDFKDYVPGLNFTFKHVYGYDFKTAT
CCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEECCHHHHCCCCCEEEEEEECCCCCCCC
GLKNKEQESNFILNYAFQNPKLKGVGFQWLYIPYKVRYGTDFNENRLFLTYTKKF
CCCCCCCCCCEEEEEEECCCEEECCCEEEEEEEEEEEECCCCCCCEEEEEEECCC
>Mature Secondary Structure
MQYSTTRLYQFMLRMGVTFGMVGCIGVIPTVVNAQDNWTLSLKNAYIDRDYDGNAVKDTG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEECCCCCCCEECCCC
SWSQGASLFYKSDYYKTPIDGLEIGVDGSVQYAVRLSHDKGVADTILPFDPVSQKQARDY
CCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHH
LKYGGTLKLKYDQTELRVGELWPDLPVTAVDRSRQLLTSYQGVSLNSKLTSKLTGEIGII
HHCCCEEEEEECHHHEEEECCCCCCCEEHHHHHHHHHHHHCCCEECCHHHHHHCCCEEEE
SKVSPRNEEDFRKLTFTKNGIKYVSDGLNYIDLKYQVLPNLKLEYYFGNLENLYNKHYLG
EECCCCCHHHHEEEEEECCCCHHHHCCCCEEEEEEEECCCCEEEEEECCHHHHHHCCCCC
ADYSYKLSPEASLHTKLKYFNASEDNKNYNIDSQNFGILETLKYRNHTVGLGYQQIVGDA
CCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEECCCHHHHHCCC
YPLPDGFLPETYFINWNTTGFFKSDEKSVHFIYGYDFKDYVPGLNFTFKHVYGYDFKTAT
CCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEECCHHHHCCCCCEEEEEEECCCCCCCC
GLKNKEQESNFILNYAFQNPKLKGVGFQWLYIPYKVRYGTDFNENRLFLTYTKKF
CCCCCCCCCCEEEEEEECCCEEECCCEEEEEEEEEEEECCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]