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The map label for this gene is ompW [H]

Identifier: 50084388

GI number: 50084388

Start: 1200012

End: 1200776

Strand: Direct

Name: ompW [H]

Synonym: ACIAD1199

Alternate gene names: 50084388

Gene position: 1200012-1200776 (Clockwise)

Preceding gene: 50084387

Following gene: 50084389

Centisome position: 33.35

GC content: 40.26

Gene sequence:

>765_bases
ATGGGACGTATTCTGATGAAAAAATTAACAACAGCACTTTTACCACTTGCATTACTCGTAACCAGCTTTGGCGCACAGGC
AGCGACTTCGGATGGCAATAACTTTGCTGTTTCTGCGGGTTGGGCTCATATCATGCCACAAGGCACCAAGCAGGGTGTAA
ATTCTACATCATCAATTCCTTATTTTAATACCTTCAATTCAGCTGCAGGCTTTGAATTGGACAATGCTGATACTGCAGAA
TTTAAGTTAGATTATTTGGTCAATGATAATGTGACAGTTGGTTTGATCTTGGGTGTTCCACCTAAGGTCGACATTCAAGG
TAAGGGACAATTGTTAGCTGGCGCATTAAATCTTGATAGCTTTAGCAAAGTTGGGGATGTAAAAGTTTATAGCCCAGTGC
TGACTGGTAAATATACATTTGGAAGTGTAAACAATAAGTTCCGTCCATATGTAGGTGCCGGTTTTATGTATGCAAGTTTC
CGTGATTTTAAACTTAATCCAGAAGTAAATGCTAAAATTGCTCCTCTTGGTGGAACCATCAGTAATGTCGATATTGATGA
TGCGGTAGCGCCAGTTGCGTTTATTGGTGCAGACTACAATATTACGCCTAACTGGTTTGCAACGGCTTCAGTGAGCTATG
TACACCTAAGTACCCATGCAAATCTCAATGTTGTGAATCCTGCTAATGTCACATTTGTACAAGGTTCAAGCAAAATTGAA
ATTAATCCAATCGTGACTTATTTAGGTGTGGGCTACCGCTTCTAA

Upstream 100 bases:

>100_bases
GTTACGAAATATTGAGTTTTCCAGTTGATCTTTCATTTAATTATTCTAATATCTGTGTATCTATAAAGGCTAGGATGCCT
TGGCCTTTGGATGAAATAAT

Downstream 100 bases:

>100_bases
GTTCGGCTCAGATTCAAAAAAACCCCGATTTATTCGGGTTTTTTTTATGATTAAAATACAATTGCTATAAAAATCAGTTG
TGTCGAATTTGTTATACTGT

Product: outer membrane W signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MGRILMKKLTTALLPLALLVTSFGAQAATSDGNNFAVSAGWAHIMPQGTKQGVNSTSSIPYFNTFNSAAGFELDNADTAE
FKLDYLVNDNVTVGLILGVPPKVDIQGKGQLLAGALNLDSFSKVGDVKVYSPVLTGKYTFGSVNNKFRPYVGAGFMYASF
RDFKLNPEVNAKIAPLGGTISNVDIDDAVAPVAFIGADYNITPNWFATASVSYVHLSTHANLNVVNPANVTFVQGSSKIE
INPIVTYLGVGYRF

Sequences:

>Translated_254_residues
MGRILMKKLTTALLPLALLVTSFGAQAATSDGNNFAVSAGWAHIMPQGTKQGVNSTSSIPYFNTFNSAAGFELDNADTAE
FKLDYLVNDNVTVGLILGVPPKVDIQGKGQLLAGALNLDSFSKVGDVKVYSPVLTGKYTFGSVNNKFRPYVGAGFMYASF
RDFKLNPEVNAKIAPLGGTISNVDIDDAVAPVAFIGADYNITPNWFATASVSYVHLSTHANLNVVNPANVTFVQGSSKIE
INPIVTYLGVGYRF
>Mature_253_residues
GRILMKKLTTALLPLALLVTSFGAQAATSDGNNFAVSAGWAHIMPQGTKQGVNSTSSIPYFNTFNSAAGFELDNADTAEF
KLDYLVNDNVTVGLILGVPPKVDIQGKGQLLAGALNLDSFSKVGDVKVYSPVLTGKYTFGSVNNKFRPYVGAGFMYASFR
DFKLNPEVNAKIAPLGGTISNVDIDDAVAPVAFIGADYNITPNWFATASVSYVHLSTHANLNVVNPANVTFVQGSSKIEI
NPIVTYLGVGYRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=249, Percent_Identity=27.3092369477912, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 27029; Mature: 26898

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRILMKKLTTALLPLALLVTSFGAQAATSDGNNFAVSAGWAHIMPQGTKQGVNSTSSIP
CCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCEEEECCCCCHHCCCCCCCCC
YFNTFNSAAGFELDNADTAEFKLDYLVNDNVTVGLILGVPPKVDIQGKGQLLAGALNLDS
EEECCCCCCCEEECCCCCCEEEEEEEECCCCEEEEEECCCCCEEECCCCEEEEEEECCCC
FSKVGDVKVYSPVLTGKYTFGSVNNKFRPYVGAGFMYASFRDFKLNPEVNAKIAPLGGTI
CCCCCCEEEECCEEECEEEECCCCCCCCCEECCCEEEEEEEEEEECCCCCEEEEECCCCC
SNVDIDDAVAPVAFIGADYNITPNWFATASVSYVHLSTHANLNVVNPANVTFVQGSSKIE
CCCCCCHHHCCEEEECCCCCCCCCEEEEEEEEEEEEEECCCEEEECCCCEEEEECCCEEE
INPIVTYLGVGYRF
EEEEEEEEECCCCC
>Mature Secondary Structure 
GRILMKKLTTALLPLALLVTSFGAQAATSDGNNFAVSAGWAHIMPQGTKQGVNSTSSIP
CHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCEEEECCCCCHHCCCCCCCCC
YFNTFNSAAGFELDNADTAEFKLDYLVNDNVTVGLILGVPPKVDIQGKGQLLAGALNLDS
EEECCCCCCCEEECCCCCCEEEEEEEECCCCEEEEEECCCCCEEECCCCEEEEEEECCCC
FSKVGDVKVYSPVLTGKYTFGSVNNKFRPYVGAGFMYASFRDFKLNPEVNAKIAPLGGTI
CCCCCCEEEECCEEECEEEECCCCCCCCCEECCCEEEEEEEEEEECCCCCEEEEECCCCC
SNVDIDDAVAPVAFIGADYNITPNWFATASVSYVHLSTHANLNVVNPANVTFVQGSSKIE
CCCCCCHHHCCEEEECCCCCCCCCEEEEEEEEEEEEEECCCEEEECCCCEEEEECCCEEE
INPIVTYLGVGYRF
EEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]