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The map label for this gene is ygiD [H]

Identifier: 50084306

GI number: 50084306

Start: 1100020

End: 1100796

Strand: Reverse

Name: ygiD [H]

Synonym: ACIAD1112

Alternate gene names: 50084306

Gene position: 1100796-1100020 (Counterclockwise)

Preceding gene: 50084307

Following gene: 50084305

Centisome position: 30.59

GC content: 42.73

Gene sequence:

>777_bases
ATGAATCTACAAACTTTACCTGGCTTATTTATCTCGCATGGCTCTCCCATGCTGGCACTTGATCCAGAACAGGTGGGGCC
TGCTTTACACCGCTTAAGTTTCAATTTACCTAAACCTCAGGCTATTATTGTGATGTCTGCACATTGGGAAAGCCAATCCC
TTGAAATTAGCACATCAACACGCCCACGGACTTGGCACGATTTTCGGGGTTTTCCCAAAGAACTCTATGAGATTCATTAT
CCAGCTGCTGGTGAACCAGATCTGGCCGAACAGATTTTAAAATTATTGGCAGATGCCCATATTCCTGCCCATGCCAATAG
TACACGTCCACGTGATCATGGGGTATGGATGCCTTTACTACATATGTATCCAGATGCAGATATTCCTGTTATTGAAATCT
CATTACCTATGCAGATGAATGCAGATCAAATTTACAATATTGGTCAAGTTTTGGCGCCTTTGCGCCAGCAGCAAATCCTA
TTGATTGGCTCGGGAAGTATTACTCATAATCTGGCTGAACTATCTTGGAATGGTGACGCACAAAAAATACCCGAATGGGC
ATCTGTATTTCGTAATCATGTAGTAAGTAAACTGCATCATCAAGATTATGAGGCCGTCCTCAACTGGCCCGACCTTCCTT
TTATTGAGCGCAATCATCCAAGCCTTGAGCATTTTGCACCCTTGTTTTTTGCAATGGGAACAGGTCATCGCTTTTCAATC
GTGCATAGTAGTTTTTCTATGGGCTCATTGGGTATGGATATTTATCGTTTTGACTAA

Upstream 100 bases:

>100_bases
TTGTTTGATCTTTTATATTTTAAATATCTGCGATCCAGCATGTTTCTTGCTTTCAAATATGACCTTAGTATGTTGATATA
AAAATTAGGTGTAGTGCATT

Downstream 100 bases:

>100_bases
AACATAGCCTGGATCTTAAATTTTTGTGCTAGATCAGTCTTAAATTAAAATTAAGAATATGTAACAACAGCGTTGTAGAC
CTGTTTTAAAATAGATACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNLQTLPGLFISHGSPMLALDPEQVGPALHRLSFNLPKPQAIIVMSAHWESQSLEISTSTRPRTWHDFRGFPKELYEIHY
PAAGEPDLAEQILKLLADAHIPAHANSTRPRDHGVWMPLLHMYPDADIPVIEISLPMQMNADQIYNIGQVLAPLRQQQIL
LIGSGSITHNLAELSWNGDAQKIPEWASVFRNHVVSKLHHQDYEAVLNWPDLPFIERNHPSLEHFAPLFFAMGTGHRFSI
VHSSFSMGSLGMDIYRFD

Sequences:

>Translated_258_residues
MNLQTLPGLFISHGSPMLALDPEQVGPALHRLSFNLPKPQAIIVMSAHWESQSLEISTSTRPRTWHDFRGFPKELYEIHY
PAAGEPDLAEQILKLLADAHIPAHANSTRPRDHGVWMPLLHMYPDADIPVIEISLPMQMNADQIYNIGQVLAPLRQQQIL
LIGSGSITHNLAELSWNGDAQKIPEWASVFRNHVVSKLHHQDYEAVLNWPDLPFIERNHPSLEHFAPLFFAMGTGHRFSI
VHSSFSMGSLGMDIYRFD
>Mature_258_residues
MNLQTLPGLFISHGSPMLALDPEQVGPALHRLSFNLPKPQAIIVMSAHWESQSLEISTSTRPRTWHDFRGFPKELYEIHY
PAAGEPDLAEQILKLLADAHIPAHANSTRPRDHGVWMPLLHMYPDADIPVIEISLPMQMNADQIYNIGQVLAPLRQQQIL
LIGSGSITHNLAELSWNGDAQKIPEWASVFRNHVVSKLHHQDYEAVLNWPDLPFIERNHPSLEHFAPLFFAMGTGHRFSI
VHSSFSMGSLGMDIYRFD

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=259, Percent_Identity=37.4517374517375, Blast_Score=168, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29181; Mature: 29181

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLQTLPGLFISHGSPMLALDPEQVGPALHRLSFNLPKPQAIIVMSAHWESQSLEISTST
CCCCCCCCEEEECCCCEEEECHHHHCHHHHHHCCCCCCCCEEEEEEECCCCCCEEEECCC
RPRTWHDFRGFPKELYEIHYPAAGEPDLAEQILKLLADAHIPAHANSTRPRDHGVWMPLL
CCCCCHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
HMYPDADIPVIEISLPMQMNADQIYNIGQVLAPLRQQQILLIGSGSITHNLAELSWNGDA
HHCCCCCCCEEEEECCCEECHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHEEEECCCCH
QKIPEWASVFRNHVVSKLHHQDYEAVLNWPDLPFIERNHPSLEHFAPLFFAMGTGHRFSI
HHCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCCEEEE
VHSSFSMGSLGMDIYRFD
EECCCCCCCCCCEEEECC
>Mature Secondary Structure
MNLQTLPGLFISHGSPMLALDPEQVGPALHRLSFNLPKPQAIIVMSAHWESQSLEISTST
CCCCCCCCEEEECCCCEEEECHHHHCHHHHHHCCCCCCCCEEEEEEECCCCCCEEEECCC
RPRTWHDFRGFPKELYEIHYPAAGEPDLAEQILKLLADAHIPAHANSTRPRDHGVWMPLL
CCCCCHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
HMYPDADIPVIEISLPMQMNADQIYNIGQVLAPLRQQQILLIGSGSITHNLAELSWNGDA
HHCCCCCCCEEEEECCCEECHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHEEEECCCCH
QKIPEWASVFRNHVVSKLHHQDYEAVLNWPDLPFIERNHPSLEHFAPLFFAMGTGHRFSI
HHCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCCEEEE
VHSSFSMGSLGMDIYRFD
EECCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]