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The map label for this gene is ypjD [H]

Identifier: 50084051

GI number: 50084051

Start: 825453

End: 826262

Strand: Reverse

Name: ypjD [H]

Synonym: ACIAD0838

Alternate gene names: 50084051

Gene position: 826262-825453 (Counterclockwise)

Preceding gene: 50084053

Following gene: 50084050

Centisome position: 22.96

GC content: 39.51

Gene sequence:

>810_bases
ATGATCAGTCTCCCGTTGGCTTATACCATTTTGGCTCTTATTGCATATACAACATCATTTTGGTATCTGTTTATGCACTT
AATGTCAAAACGTGATCCCAACTATTGGTTTATTGGACTTGTACTCGGTTTAGGTCTGCTTTTACATACGGGCGTGTTGT
ATAACAACATGATGACCCCAATTGGCATCAATTACGATGTCTTTAACCTGATATCATTTACTTCAGGGCTGATGCTGTTA
TTAAGTCTACTATTTAGTACCTTTCGTCCTGTACTCGCATTAAACCTGATTGGTATTCCTGTCGCAGCAACGGGACTTAT
TCTTGGCTATGCTTTTAGCCGTCCAGACCAGTATATTGAGCAGCATTCGCTGGGTTTAGATGCACATATTATTTTATCAC
TTTCAGCCTATGCCGTTCTGCTCATGGCTACCATTCATGCAATTTTGCTTTGGTTTCAAGATCGCGAGCTGAAGAAGAAA
CAAAAACACCGTTTCTGGGTCAACCTACTTCCGCCATTTCAGGCCATGGAATCCCTGTTATTTGATTTATTACGCACAGG
GTTTGCATTACTCACCATTGCTCTGATTTTTGGTTTTTTCACTGTAGATAATTTCCTGAGCCAACATCTGGCCCATAAAA
CCGTGTTTAGTATTATTTCATGGTTTATTTATGGTTCTCTTTTAATTGGGCATACCAAATTTGGCTGGCGTGGTCAAAAA
GCGATTCGCTTTACCCTCATGGGTTTTATCTTACTGGCGATTGGCTTTATTGGCAGCAAAATGATTCTTGAATTAATTTT
GGGTAAATAA

Upstream 100 bases:

>100_bases
AAATAGAAAATTTATGCATAAGATGCTATAGGATACTGTAGTTCGCCGCGAATTTATATCTCATCTAGATGAATATTCTC
AATCCCAAAAAAGGTTTGAC

Downstream 100 bases:

>100_bases
AAAACGGTTCAGTTGATTATTCTTTTCATATGATGATGCATCTACTTTAATTCTCCAAAAGTAAATCGAATGAAGAAGAA
ATCTCAAACTGGACATCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MISLPLAYTILALIAYTTSFWYLFMHLMSKRDPNYWFIGLVLGLGLLLHTGVLYNNMMTPIGINYDVFNLISFTSGLMLL
LSLLFSTFRPVLALNLIGIPVAATGLILGYAFSRPDQYIEQHSLGLDAHIILSLSAYAVLLMATIHAILLWFQDRELKKK
QKHRFWVNLLPPFQAMESLLFDLLRTGFALLTIALIFGFFTVDNFLSQHLAHKTVFSIISWFIYGSLLIGHTKFGWRGQK
AIRFTLMGFILLAIGFIGSKMILELILGK

Sequences:

>Translated_269_residues
MISLPLAYTILALIAYTTSFWYLFMHLMSKRDPNYWFIGLVLGLGLLLHTGVLYNNMMTPIGINYDVFNLISFTSGLMLL
LSLLFSTFRPVLALNLIGIPVAATGLILGYAFSRPDQYIEQHSLGLDAHIILSLSAYAVLLMATIHAILLWFQDRELKKK
QKHRFWVNLLPPFQAMESLLFDLLRTGFALLTIALIFGFFTVDNFLSQHLAHKTVFSIISWFIYGSLLIGHTKFGWRGQK
AIRFTLMGFILLAIGFIGSKMILELILGK
>Mature_269_residues
MISLPLAYTILALIAYTTSFWYLFMHLMSKRDPNYWFIGLVLGLGLLLHTGVLYNNMMTPIGINYDVFNLISFTSGLMLL
LSLLFSTFRPVLALNLIGIPVAATGLILGYAFSRPDQYIEQHSLGLDAHIILSLSAYAVLLMATIHAILLWFQDRELKKK
QKHRFWVNLLPPFQAMESLLFDLLRTGFALLTIALIFGFFTVDNFLSQHLAHKTVFSIISWFIYGSLLIGHTKFGWRGQK
AIRFTLMGFILLAIGFIGSKMILELILGK

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=266, Percent_Identity=28.1954887218045, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30501; Mature: 30501

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]