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The map label for this gene is yncD [H]

Identifier: 50083931

GI number: 50083931

Start: 694784

End: 696940

Strand: Direct

Name: yncD [H]

Synonym: ACIAD0708

Alternate gene names: 50083931

Gene position: 694784-696940 (Clockwise)

Preceding gene: 50083928

Following gene: 50083932

Centisome position: 19.31

GC content: 42.33

Gene sequence:

>2157_bases
ATGCGTTTTACACGATTCAATACACTGTATCGTTATATGTTTTTAGCAACAGGTTTGGGGACGAGTGGTTCCCTTTGGGC
ACAAGAAACTGTAAATACAGCAGTCCAATTACCCACCATTAAAGTAGAAGCGACACGAACCGATACCGAATATTTAAAAA
CGCCTGCCTCTATTTTCCGTATTGATGCACCGCAACAGATCGAAAGTGCAGGAGTTAACCTGACTGAAGTAGTGAAAGGC
GTTCCAGGGATTCAGTTAAATAATCGGGAAAACTATGCACAAGACTTGCAGCTTTCTATGCGTGGTTTTGGCGCACGTTC
TACCTTTGGCGTACGTGGTATACGTTTGTATGTCGATGGTATTCCTGCCACCATGCCCGATGGCCAAGGCCAAACCTCTA
ATATTGATTTGAGTAGTCTGGATCATATTGAGGTGTTAACTGGGCCATTTTCATCATTGTATGGAAACTCATCTGGCGGA
ACTTTACTGACCACGACGAAAGAAGGACAGGGTAAGGACTCAGTTGAACTGAATTATTCAGGCGGCAGTCATGATAAAAA
TCGGACAGGTTTAATATTGCAAGGCGGCGCTAAACAAAGTAATCAACCGAGTTATGTAATTAGCTCATCCTATTTTGACA
CCGATGGTTATCGTGAACACAGTGCTGCTCACAAAATCTTGAATAATGCCAAACTCACATGGAATCTGGACGACGGCTCA
AAAATTAACTGGATCACCAATTATGTCAAAATTAATGCAGATGATCCGCAGGGGCTGACACGTGATCAGTGGAAAGCAAA
CCCTAAACAACAAGTACCTTTTTTACAACAATTTGATGTACGTAAAGATATCGAACAGACGCAAACAGGTGTGACCTGGA
GTAAACCCATCAATGATCAAAATGAGCTGTATATGATGGGATATCTGGGCAATCGTAAAGTCACACAATATCAGTCGATT
CCTAAATCTACGCAAGATGCGAGTAAAAATCAGGCTGGTGGTGTGATTGATTTTGAACGGAATTATTATGGGGCAGATCT
ACGTTGGACAGGTAAGGAATTATTACCGAATACAACTTTTAGCGTAGGCGTGGCTCTTGATGCGATGGATGAAGACCGTA
AAGGCTACGAAAATTACGTTACGGTCAATAATCAACCAAGCTATGGGGTGAAAGGCAATTTACGTCGTGACGAAGACAAT
ACGCTTTGGAATATCGACCCTTATCTACAAGCGTCATGGCAGTTCTTACCGACTTGGCGCCTAGATACAGGGGTTCGCTA
CAGTAATGTTCACTATAAGTCCGATGATCATTTTATTGTCATAGGCAATACCGCAAAAGACAGTAATCCAGATGACAGTG
GCAAGACCGATTATTCTAAGGTTTTACCTTCGGCTGCTTTAAGTTGGCAAATTGTGCCTGAACTCTTGGCTTATGTGAGT
TATGCTAAAGGTTTTGAAACGCCCACCTTTACAGAAATGGCGTATAACCCAGATCCAGATCTTTCAGGTTTTAATTTTGG
TTTAAAAGCATCGACCAGCGATACCTATGAAGCAGGGCTAAAATCACAAAACAGACTTGGTGATTTTACTTTGGCTGCAT
TTCAGACCAAAACCAAGGATGACATTGTCTCGGCGGGAAGTATCAATGGGCGTGCCACTTTTCGCAATGCCGATAGAACC
TTACGTGAAGGTATCGAATTTACATGGAATAAACAGCTTTGGCGTGATCTGGTCTTAAATACAAGCTATGCTTATTTGAA
TGCAACTTTCGATGCAGATGTACCTGCAACTGCTTCTGTTGCTGCCATTACATCGGGTAATCAAATTCCAGGAGTCGCAA
AAAATCAGGCTTATGCATCTTTGGCGTGGAAGCCTCAAACCGGTTTTCATGGAGGCATAGATGCCCAGTACAACGACAAA
ATTTATGTGGATGATAAAAACTCAGATGCAGCACCGAGCTACACCGTAGTTGCAGCCTATGCAGGATATACATGGCAAAT
GCAGGACTGGAAACTAAATGTATATAGCCGTGTGGATAATATGTTCGATAAAAGTTATGTGGGTTCGGTGATTGTTAATG
ATGGCAATAGCCGTTTTTTTGAACCGGCAGATGGTCGAAACTGGAGTGCAGGTTTGCGTGTAAGCAAACAATTTTAA

Upstream 100 bases:

>100_bases
CAGGCATCGATAAAATCGTTTTTTGTCGATATGATATTCAGATATTTTTAAGTTTTAATGCTTTACTTTTGGGTAAAATT
TTCAAGATAAGGATAAATGA

Downstream 100 bases:

>100_bases
TCTGATCTAGAGGTGAAACGTGGCAAAGCTATTTGAAAATATTCAGTTTGATACATTGCGCCTGAGCAATAAAATTATTA
TTGCACCGATGTGTCAGTAC

Product: tonB-dependent receptor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MRFTRFNTLYRYMFLATGLGTSGSLWAQETVNTAVQLPTIKVEATRTDTEYLKTPASIFRIDAPQQIESAGVNLTEVVKG
VPGIQLNNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDGIPATMPDGQGQTSNIDLSSLDHIEVLTGPFSSLYGNSSGG
TLLTTTKEGQGKDSVELNYSGGSHDKNRTGLILQGGAKQSNQPSYVISSSYFDTDGYREHSAAHKILNNAKLTWNLDDGS
KINWITNYVKINADDPQGLTRDQWKANPKQQVPFLQQFDVRKDIEQTQTGVTWSKPINDQNELYMMGYLGNRKVTQYQSI
PKSTQDASKNQAGGVIDFERNYYGADLRWTGKELLPNTTFSVGVALDAMDEDRKGYENYVTVNNQPSYGVKGNLRRDEDN
TLWNIDPYLQASWQFLPTWRLDTGVRYSNVHYKSDDHFIVIGNTAKDSNPDDSGKTDYSKVLPSAALSWQIVPELLAYVS
YAKGFETPTFTEMAYNPDPDLSGFNFGLKASTSDTYEAGLKSQNRLGDFTLAAFQTKTKDDIVSAGSINGRATFRNADRT
LREGIEFTWNKQLWRDLVLNTSYAYLNATFDADVPATASVAAITSGNQIPGVAKNQAYASLAWKPQTGFHGGIDAQYNDK
IYVDDKNSDAAPSYTVVAAYAGYTWQMQDWKLNVYSRVDNMFDKSYVGSVIVNDGNSRFFEPADGRNWSAGLRVSKQF

Sequences:

>Translated_718_residues
MRFTRFNTLYRYMFLATGLGTSGSLWAQETVNTAVQLPTIKVEATRTDTEYLKTPASIFRIDAPQQIESAGVNLTEVVKG
VPGIQLNNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDGIPATMPDGQGQTSNIDLSSLDHIEVLTGPFSSLYGNSSGG
TLLTTTKEGQGKDSVELNYSGGSHDKNRTGLILQGGAKQSNQPSYVISSSYFDTDGYREHSAAHKILNNAKLTWNLDDGS
KINWITNYVKINADDPQGLTRDQWKANPKQQVPFLQQFDVRKDIEQTQTGVTWSKPINDQNELYMMGYLGNRKVTQYQSI
PKSTQDASKNQAGGVIDFERNYYGADLRWTGKELLPNTTFSVGVALDAMDEDRKGYENYVTVNNQPSYGVKGNLRRDEDN
TLWNIDPYLQASWQFLPTWRLDTGVRYSNVHYKSDDHFIVIGNTAKDSNPDDSGKTDYSKVLPSAALSWQIVPELLAYVS
YAKGFETPTFTEMAYNPDPDLSGFNFGLKASTSDTYEAGLKSQNRLGDFTLAAFQTKTKDDIVSAGSINGRATFRNADRT
LREGIEFTWNKQLWRDLVLNTSYAYLNATFDADVPATASVAAITSGNQIPGVAKNQAYASLAWKPQTGFHGGIDAQYNDK
IYVDDKNSDAAPSYTVVAAYAGYTWQMQDWKLNVYSRVDNMFDKSYVGSVIVNDGNSRFFEPADGRNWSAGLRVSKQF
>Mature_718_residues
MRFTRFNTLYRYMFLATGLGTSGSLWAQETVNTAVQLPTIKVEATRTDTEYLKTPASIFRIDAPQQIESAGVNLTEVVKG
VPGIQLNNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDGIPATMPDGQGQTSNIDLSSLDHIEVLTGPFSSLYGNSSGG
TLLTTTKEGQGKDSVELNYSGGSHDKNRTGLILQGGAKQSNQPSYVISSSYFDTDGYREHSAAHKILNNAKLTWNLDDGS
KINWITNYVKINADDPQGLTRDQWKANPKQQVPFLQQFDVRKDIEQTQTGVTWSKPINDQNELYMMGYLGNRKVTQYQSI
PKSTQDASKNQAGGVIDFERNYYGADLRWTGKELLPNTTFSVGVALDAMDEDRKGYENYVTVNNQPSYGVKGNLRRDEDN
TLWNIDPYLQASWQFLPTWRLDTGVRYSNVHYKSDDHFIVIGNTAKDSNPDDSGKTDYSKVLPSAALSWQIVPELLAYVS
YAKGFETPTFTEMAYNPDPDLSGFNFGLKASTSDTYEAGLKSQNRLGDFTLAAFQTKTKDDIVSAGSINGRATFRNADRT
LREGIEFTWNKQLWRDLVLNTSYAYLNATFDADVPATASVAAITSGNQIPGVAKNQAYASLAWKPQTGFHGGIDAQYNDK
IYVDDKNSDAAPSYTVVAAYAGYTWQMQDWKLNVYSRVDNMFDKSYVGSVIVNDGNSRFFEPADGRNWSAGLRVSKQF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=687, Percent_Identity=46.2882096069869, Blast_Score=610, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 79887; Mature: 79887

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFTRFNTLYRYMFLATGLGTSGSLWAQETVNTAVQLPTIKVEATRTDTEYLKTPASIFR
CCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHCCEEECCEEEEEEECCCHHHHHCCCCEEE
IDAPQQIESAGVNLTEVVKGVPGIQLNNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDG
ECCCHHHHHCCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEC
IPATMPDGQGQTSNIDLSSLDHIEVLTGPFSSLYGNSSGGTLLTTTKEGQGKDSVELNYS
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCEEEEEECCCCCCCCEEEEEC
GGSHDKNRTGLILQGGAKQSNQPSYVISSSYFDTDGYREHSAAHKILNNAKLTWNLDDGS
CCCCCCCCCEEEEECCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCCCEEEEECCCCC
KINWITNYVKINADDPQGLTRDQWKANPKQQVPFLQQFDVRKDIEQTQTGVTWSKPINDQ
EEEEEEEEEEEECCCCCCCCCHHHCCCCHHCCCHHHHHHHHHHHHHHHCCCEECCCCCCC
NELYMMGYLGNRKVTQYQSIPKSTQDASKNQAGGVIDFERNYYGADLRWTGKELLPNTTF
CCEEEEEECCCCCCHHHHCCCCCHHHCCCCCCCCEEEECCCEECCCEEECCHHHCCCCCE
SVGVALDAMDEDRKGYENYVTVNNQPSYGVKGNLRRDEDNTLWNIDPYLQASWQFLPTWR
EEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEEEEEE
LDTGVRYSNVHYKSDDHFIVIGNTAKDSNPDDSGKTDYSKVLPSAALSWQIVPELLAYVS
CCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHH
YAKGFETPTFTEMAYNPDPDLSGFNFGLKASTSDTYEAGLKSQNRLGDFTLAAFQTKTKD
HHCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCEEEEEEECCCHH
DIVSAGSINGRATFRNADRTLREGIEFTWNKQLWRDLVLNTSYAYLNATFDADVPATASV
HHEECCCCCCCEEECCHHHHHHCCCCEEECHHHHHHHHHCCCEEEEEEEECCCCCCCCEE
AAITSGNQIPGVAKNQAYASLAWKPQTGFHGGIDAQYNDKIYVDDKNSDAAPSYTVVAAY
EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCEEEEECCCCCCCCCEEEEEEE
AGYTWQMQDWKLNVYSRVDNMFDKSYVGSVIVNDGNSRFFEPADGRNWSAGLRVSKQF
CCEEEEEECCEEEHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MRFTRFNTLYRYMFLATGLGTSGSLWAQETVNTAVQLPTIKVEATRTDTEYLKTPASIFR
CCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHCCEEECCEEEEEEECCCHHHHHCCCCEEE
IDAPQQIESAGVNLTEVVKGVPGIQLNNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDG
ECCCHHHHHCCCCHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEC
IPATMPDGQGQTSNIDLSSLDHIEVLTGPFSSLYGNSSGGTLLTTTKEGQGKDSVELNYS
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCEEEEEECCCCCCCCEEEEEC
GGSHDKNRTGLILQGGAKQSNQPSYVISSSYFDTDGYREHSAAHKILNNAKLTWNLDDGS
CCCCCCCCCEEEEECCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCCCEEEEECCCCC
KINWITNYVKINADDPQGLTRDQWKANPKQQVPFLQQFDVRKDIEQTQTGVTWSKPINDQ
EEEEEEEEEEEECCCCCCCCCHHHCCCCHHCCCHHHHHHHHHHHHHHHCCCEECCCCCCC
NELYMMGYLGNRKVTQYQSIPKSTQDASKNQAGGVIDFERNYYGADLRWTGKELLPNTTF
CCEEEEEECCCCCCHHHHCCCCCHHHCCCCCCCCEEEECCCEECCCEEECCHHHCCCCCE
SVGVALDAMDEDRKGYENYVTVNNQPSYGVKGNLRRDEDNTLWNIDPYLQASWQFLPTWR
EEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEEEEEE
LDTGVRYSNVHYKSDDHFIVIGNTAKDSNPDDSGKTDYSKVLPSAALSWQIVPELLAYVS
CCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHH
YAKGFETPTFTEMAYNPDPDLSGFNFGLKASTSDTYEAGLKSQNRLGDFTLAAFQTKTKD
HHCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCEEEEEEECCCHH
DIVSAGSINGRATFRNADRTLREGIEFTWNKQLWRDLVLNTSYAYLNATFDADVPATASV
HHEECCCCCCCEEECCHHHHHHCCCCEEECHHHHHHHHHCCCEEEEEEEECCCCCCCCEE
AAITSGNQIPGVAKNQAYASLAWKPQTGFHGGIDAQYNDKIYVDDKNSDAAPSYTVVAAY
EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCEEEEECCCCCCCCCEEEEEEE
AGYTWQMQDWKLNVYSRVDNMFDKSYVGSVIVNDGNSRFFEPADGRNWSAGLRVSKQF
CCEEEEEECCEEEHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]