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The map label for this gene is rsmC

Identifier: 50083924

GI number: 50083924

Start: 687674

End: 688690

Strand: Reverse

Name: rsmC

Synonym: ACIAD0701

Alternate gene names: 50083924

Gene position: 688690-687674 (Counterclockwise)

Preceding gene: 50083925

Following gene: 50083923

Centisome position: 19.14

GC content: 41.69

Gene sequence:

>1017_bases
ATGGACCCACGTAGTGAAGTGGTACTTCGGCAGCAACAATATCTGGCTATCAAGATTTTACTGATTAACCCTCCTGCCGA
TGAACTTGCGCAGCAGCTTGCACATAAACATCAAGTTTCGGTATGGACTTGGAATTTTGCAGATCACCAATACTTTCAAC
ATCAGTCGATTCAATCTGATTTTGCTGTCACTTTTCCAGATCAGATACCAGATCAGGTGATTATTTTTGTACCAAAGTCA
AAAGAGCTATTAAGTTATCTATTACATGTAGTGGTGAGTCATCTTCCTGCTGGACAGCATATTTTTTTGGTGGGTGAAAA
AAAAGGGGGGGTAGAACGTGCATCAAAGCAATTACAAAGCTACGGAAAAACAGTCAAACTCGACAGCGCTCGTCATTGCC
AGCTCTGGCAAACTACGATCGAAACCACAGAACAGCTCAAACCACTTGAACAATGGCTAAAACATTATTCTGTAAAAAAT
GAAAATATACAGCTAGAAATTTACGCCTTACCTGGCGTGTTTAGTCAGAATCATCTCGATATTGGCACGGCCGTACTCCT
ACCTTATCTAAACCAGATAAAATTGGGTAAAATTGCCGACTTTGGTTGTGGTGCAGGGGTCATCAGTGCATATCTGGCTC
AACTGAGTCCGCACAATGAAATTCATGCACTAGATATTGATGCTTTTGCACTTCGATCTACCGAATTCACATTTCAGCGC
AATGGATTAGCATCTGAACGTCTGCATCTGCATGCTGTGACTGGCATTCAGGATGCACCGAAAGCGCTTGATGTTATTGT
GAGTAATCCACCCTTCCATCAAGGGATCCATACAGATTATTCAGCCAGCGAAGGATTGTGTAAAACAGCTAAACAGCACT
TGAATACGAGTGGCGAATTGTGGATAGTGGCGAACCGTTTTTTAAATTATCCTCTTTTGATCGAACAAACCTTTGGCCAG
TGTCAAGTAAAAACCGATCAACAAGGATTCAAAATTCTCTATGCCAAAGCGACTTAA

Upstream 100 bases:

>100_bases
GATACTGAATATTATATTGCCTGAACACAAACAATAACTTAGGTAATTCAACAGATTTGCCCAGTATTGACTGGGCTTTG
TTATTCATGAGAGACACAAG

Downstream 100 bases:

>100_bases
GGAATGTAAGGAATTTTCATGAGCGAAACCACTCAACCTGATCAGCTCCAGCGCAAGCTCGGTGCTCGTCATCTTAATAT
GATTGCCATTGGCGGCTCCA

Product: ribosomal RNA small subunit methyltransferase C (rRNA (guanine-N(2)-)-methyltransferase) (16S rRNA m2G1207 methyltransferase)

Products: NA

Alternate protein names: 16S rRNA m2G1207 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase rsmC

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSDFAVTFPDQIPDQVIIFVPKS
KELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQSYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKN
ENIQLEIYALPGVFSQNHLDIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR
NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGELWIVANRFLNYPLLIEQTFGQ
CQVKTDQQGFKILYAKAT

Sequences:

>Translated_338_residues
MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSDFAVTFPDQIPDQVIIFVPKS
KELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQSYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKN
ENIQLEIYALPGVFSQNHLDIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR
NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGELWIVANRFLNYPLLIEQTFGQ
CQVKTDQQGFKILYAKAT
>Mature_338_residues
MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSDFAVTFPDQIPDQVIIFVPKS
KELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQSYGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKN
ENIQLEIYALPGVFSQNHLDIGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR
NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGELWIVANRFLNYPLLIEQTFGQ
CQVKTDQQGFKILYAKAT

Specific function: Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle

COG id: COG2813

COG function: function code J; 16S RNA G1207 methylase RsmC

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmC family

Homologues:

Organism=Escherichia coli, GI1790830, Length=346, Percent_Identity=34.6820809248555, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI87082206, Length=283, Percent_Identity=28.6219081272085, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSMC_ACIAD (Q6FE96)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_045434.1
- ProteinModelPortal:   Q6FE96
- SMR:   Q6FE96
- STRING:   Q6FE96
- GeneID:   2880548
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD0701
- NMPDR:   fig|62977.3.peg.389
- eggNOG:   COG2813
- HOGENOM:   HBG296757
- OMA:   RHCQLWQ
- PhylomeDB:   Q6FE96
- ProtClustDB:   CLSK707044
- BioCyc:   ASP62977:ACIAD0701-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01862
- InterPro:   IPR002052
- InterPro:   IPR013675
- InterPro:   IPR007848

Pfam domain/function: PF05175 MTS; PF08468 MTS_N

EC number: =2.1.1.172

Molecular weight: Translated: 38075; Mature: 38075

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD
CCCHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHCEEEEEEEECCCHHHHHHHCCCCC
FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS
CEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC
IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEECCCEEEEC
NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL
CCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE
WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT
EEEEHHHCCCCEEEEECCCCEEEEECCCCEEEEEEECC
>Mature Secondary Structure
MDPRSEVVLRQQQYLAIKILLINPPADELAQQLAHKHQVSVWTWNFADHQYFQHQSIQSD
CCCHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHCEEEEEEEECCCHHHHHHHCCCCC
FAVTFPDQIPDQVIIFVPKSKELLSYLLHVVVSHLPAGQHIFLVGEKKGGVERASKQLQS
CEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
YGKTVKLDSARHCQLWQTTIETTEQLKPLEQWLKHYSVKNENIQLEIYALPGVFSQNHLD
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCC
IGTAVLLPYLNQIKLGKIADFGCGAGVISAYLAQLSPHNEIHALDIDAFALRSTEFTFQR
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCEEEECCCEEEEC
NGLASERLHLHAVTGIQDAPKALDVIVSNPPFHQGIHTDYSASEGLCKTAKQHLNTSGEL
CCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE
WIVANRFLNYPLLIEQTFGQCQVKTDQQGFKILYAKAT
EEEEHHHCCCCEEEEECCCCEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA