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The map label for this gene is secF [H]

Identifier: 50083823

GI number: 50083823

Start: 575921

End: 576889

Strand: Reverse

Name: secF [H]

Synonym: ACIAD0587

Alternate gene names: 50083823

Gene position: 576889-575921 (Counterclockwise)

Preceding gene: 50083824

Following gene: 50083788

Centisome position: 16.03

GC content: 46.44

Gene sequence:

>969_bases
ATGATGACTGATATGACTCAACCTAAACCCAAGCAGTATGGCCGTCCAGACAACGAGCGGGTGATTCCGTTTATGAAAAT
TGCCAAACCAGCGGCAATTTTCTCGGTCTTGCTGACTTTGGCCAGTATCTTCTTTATTGTAACCAAGGGCCTTAACCTCG
GTTTGGACTTTACTGGCGGCGTTTCGGCAGAGCTGAATTATTCGCAACCGGTGAATCAGTCCGCTGTTTCACAAGCGCTT
GATAAAGCCGGCTTTAAAGATGCTGTGGTGCAAACACTCGGCAGTAATAAAGATCTGATCGTGCGTATGCCTGTACAAGA
CGATCTCAAAGTCGATGATCTTAGTAACGCGCTGACCAAGGCCGTGCAATTGCCAAATAATACGGCAGTAGTGCATAAGG
TCGATGCTGTTGGCGGTCAGGTCGGTAACGAGCTTTATATTCGCTCTGCTGGCGCTGTGGCTTTGGCATTGATTCTGATG
CTAGTCTACGTGACCATTCGTTTTGAATTCAAGCTTGCGATGGGCGCCGTGATGTCGTTATTTCACGACATCATTATTAT
CATTGGTGCTTTCGCGCTGTTTCAATGGCAGTTCGATTTAACCGTGCTTGCGGCTGTATTGGCGGTCATTGGCTTCTCAC
TCAACGATAACATCGTGGTATCAGACCGTATCCGTGAAAATTTCCGTAAGATTCGCGGTGCAACACCACGTGAAATTGTC
GACATTGCATTGACCGAAACCTTACGACGTACCATTCATACCTCCATGACCCTATTACTCGTGGTTCTTGCCATGATGTT
CTTGGGTGGTGATGGTTTGAAATGGTTCTCTGTTGCGATGTTTGTAGGTGTCTTTGTCGGGACCTACTCTTCGATTTATA
TCGGAACAGCATTTGCATTGTGGCGTGGTCTGAACCGTCAAGACTTTGTGGTTCAAGTCAAACCTGAATTTGAAGATGAT
ATTCCATAA

Upstream 100 bases:

>100_bases
TCTGCTCGATGTTTACTGCCATTACCGTGACCCGTGCAATTGTACAGCTCATTTATGGCAAACGTCGTAACTTGAAAAAG
TTGAGCATATAAGGAGATCG

Downstream 100 bases:

>100_bases
TCTTTAAATTTGAATGTTATTCAAAATGCCAGCAATCTGCTGGCATTTTTTTAATCAACACATTTAAGATTGTGTTTTGG
TTTTTGCCTCTAGATCGAGC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MMTDMTQPKPKQYGRPDNERVIPFMKIAKPAAIFSVLLTLASIFFIVTKGLNLGLDFTGGVSAELNYSQPVNQSAVSQAL
DKAGFKDAVVQTLGSNKDLIVRMPVQDDLKVDDLSNALTKAVQLPNNTAVVHKVDAVGGQVGNELYIRSAGAVALALILM
LVYVTIRFEFKLAMGAVMSLFHDIIIIIGAFALFQWQFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKIRGATPREIV
DIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLKWFSVAMFVGVFVGTYSSIYIGTAFALWRGLNRQDFVVQVKPEFEDD
IP

Sequences:

>Translated_322_residues
MMTDMTQPKPKQYGRPDNERVIPFMKIAKPAAIFSVLLTLASIFFIVTKGLNLGLDFTGGVSAELNYSQPVNQSAVSQAL
DKAGFKDAVVQTLGSNKDLIVRMPVQDDLKVDDLSNALTKAVQLPNNTAVVHKVDAVGGQVGNELYIRSAGAVALALILM
LVYVTIRFEFKLAMGAVMSLFHDIIIIIGAFALFQWQFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKIRGATPREIV
DIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLKWFSVAMFVGVFVGTYSSIYIGTAFALWRGLNRQDFVVQVKPEFEDD
IP
>Mature_322_residues
MMTDMTQPKPKQYGRPDNERVIPFMKIAKPAAIFSVLLTLASIFFIVTKGLNLGLDFTGGVSAELNYSQPVNQSAVSQAL
DKAGFKDAVVQTLGSNKDLIVRMPVQDDLKVDDLSNALTKAVQLPNNTAVVHKVDAVGGQVGNELYIRSAGAVALALILM
LVYVTIRFEFKLAMGAVMSLFHDIIIIIGAFALFQWQFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKIRGATPREIV
DIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLKWFSVAMFVGVFVGTYSSIYIGTAFALWRGLNRQDFVVQVKPEFEDD
IP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=306, Percent_Identity=43.1372549019608, Blast_Score=235, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35382; Mature: 35382

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTDMTQPKPKQYGRPDNERVIPFMKIAKPAAIFSVLLTLASIFFIVTKGLNLGLDFTGG
CCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC
VSAELNYSQPVNQSAVSQALDKAGFKDAVVQTLGSNKDLIVRMPVQDDLKVDDLSNALTK
CCCEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH
AVQLPNNTAVVHKVDAVGGQVGNELYIRSAGAVALALILMLVYVTIRFEFKLAMGAVMSL
HHHCCCCCEEEEEEHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHDIIIIIGAFALFQWQFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKIRGATPREIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCHHHHH
DIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLKWFSVAMFVGVFVGTYSSIYIGTAFAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGLNRQDFVVQVKPEFEDDIP
HHCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MMTDMTQPKPKQYGRPDNERVIPFMKIAKPAAIFSVLLTLASIFFIVTKGLNLGLDFTGG
CCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC
VSAELNYSQPVNQSAVSQALDKAGFKDAVVQTLGSNKDLIVRMPVQDDLKVDDLSNALTK
CCCEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH
AVQLPNNTAVVHKVDAVGGQVGNELYIRSAGAVALALILMLVYVTIRFEFKLAMGAVMSL
HHHCCCCCEEEEEEHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHDIIIIIGAFALFQWQFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKIRGATPREIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHCCCCHHHHH
DIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLKWFSVAMFVGVFVGTYSSIYIGTAFAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGLNRQDFVVQVKPEFEDDIP
HHCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]